miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10321 3' -62.3 NC_002687.1 + 226579 0.82 0.123019
Target:  5'- uGGGACCGaUGGGACCAaUGGGACCAa -3'
miRNA:   3'- gCCCUGGUcGCCCUGGUcACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 296489 0.69 0.656607
Target:  5'- gCGGGACUAaaUGGGAUCAGUGGaGGCa- -3'
miRNA:   3'- -GCCCUGGUc-GCCCUGGUCACC-CUGgu -5'
10321 3' -62.3 NC_002687.1 + 307627 0.68 0.710821
Target:  5'- uGGGagacgauguacucGCC-GUGGGACCGGUcGGGACa- -3'
miRNA:   3'- gCCC-------------UGGuCGCCCUGGUCA-CCCUGgu -5'
10321 3' -62.3 NC_002687.1 + 309667 0.67 0.790166
Target:  5'- aCGGGACCcccaagcGCGGGGCUuucGGaaucGGACCAc -3'
miRNA:   3'- -GCCCUGGu------CGCCCUGG---UCac--CCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 33530 0.68 0.747446
Target:  5'- aGGGGCgGGacgccaGGGAUacaAGUGGGuGCCAa -3'
miRNA:   3'- gCCCUGgUCg-----CCCUGg--UCACCC-UGGU- -5'
10321 3' -62.3 NC_002687.1 + 281794 0.7 0.628741
Target:  5'- uGGGAaCGGCGGGGgCAGgggccgGGGcGCCAg -3'
miRNA:   3'- gCCCUgGUCGCCCUgGUCa-----CCC-UGGU- -5'
10321 3' -62.3 NC_002687.1 + 172291 0.67 0.764832
Target:  5'- gGGGAaCGGUGGGGgCgggGGUGGGACa- -3'
miRNA:   3'- gCCCUgGUCGCCCUgG---UCACCCUGgu -5'
10321 3' -62.3 NC_002687.1 + 308423 0.67 0.776775
Target:  5'- cCGGcGACCccGGCGGGGcgggcgcgcccccucCCGGUGaGACCGg -3'
miRNA:   3'- -GCC-CUGG--UCGCCCU---------------GGUCACcCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 173454 0.67 0.790166
Target:  5'- uGGGACUggaGGUGGGACUggaggcgcaAGUGGaGGCgCAa -3'
miRNA:   3'- gCCCUGG---UCGCCCUGG---------UCACC-CUG-GU- -5'
10321 3' -62.3 NC_002687.1 + 223377 0.76 0.318321
Target:  5'- uGGGAgCAGUGGGAUCAGUGcguggucgaaucgauGGGCCGu -3'
miRNA:   3'- gCCCUgGUCGCCCUGGUCAC---------------CCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 325436 0.66 0.829956
Target:  5'- uGGGACCGGCuuuGGcACUuguggucgAGgagGGGACCAc -3'
miRNA:   3'- gCCCUGGUCGc--CC-UGG--------UCa--CCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 226552 0.8 0.170537
Target:  5'- uGGGACCGcUGGGACCGcUGGGACCGa -3'
miRNA:   3'- gCCCUGGUcGCCCUGGUcACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 87471 0.7 0.600892
Target:  5'- uCGGGGgC-GUGGGACCGGUGuGGuuCCAu -3'
miRNA:   3'- -GCCCUgGuCGCCCUGGUCAC-CCu-GGU- -5'
10321 3' -62.3 NC_002687.1 + 217471 0.7 0.610163
Target:  5'- gGGGACUcGUGGGAgCAcucGUGGGAgCCGg -3'
miRNA:   3'- gCCCUGGuCGCCCUgGU---CACCCU-GGU- -5'
10321 3' -62.3 NC_002687.1 + 86183 0.7 0.619448
Target:  5'- gCGGGACCAGCGGGACCAn-------- -3'
miRNA:   3'- -GCCCUGGUCGCCCUGGUcacccuggu -5'
10321 3' -62.3 NC_002687.1 + 312211 0.7 0.623164
Target:  5'- gGcGGAgCAGCGGGAUCGGUcaccaagguacucggGGGACUc -3'
miRNA:   3'- gC-CCUgGUCGCCCUGGUCA---------------CCCUGGu -5'
10321 3' -62.3 NC_002687.1 + 45719 0.69 0.665872
Target:  5'- gGGGAaaGGCGcGGACCAGgGGGAgaagagccCCAa -3'
miRNA:   3'- gCCCUggUCGC-CCUGGUCaCCCU--------GGU- -5'
10321 3' -62.3 NC_002687.1 + 57458 0.68 0.729726
Target:  5'- aCGGGuCUAGCgucGGGGCC-GUcGGACCAc -3'
miRNA:   3'- -GCCCuGGUCG---CCCUGGuCAcCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 86049 0.68 0.738624
Target:  5'- gCGGGGCCAGaCGGG-CCuGUGucACCc -3'
miRNA:   3'- -GCCCUGGUC-GCCCuGGuCACccUGGu -5'
10321 3' -62.3 NC_002687.1 + 45767 0.67 0.790166
Target:  5'- gGGGGaaGGCGcGGACCAGgGGGAg-- -3'
miRNA:   3'- gCCCUggUCGC-CCUGGUCaCCCUggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.