miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10321 3' -62.3 NC_002687.1 + 18638 0.72 0.518909
Target:  5'- aGGGGCaagaGGCGGcGGCgugaguGUGGGACCAg -3'
miRNA:   3'- gCCCUGg---UCGCC-CUGgu----CACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 33530 0.68 0.747446
Target:  5'- aGGGGCgGGacgccaGGGAUacaAGUGGGuGCCAa -3'
miRNA:   3'- gCCCUGgUCg-----CCCUGg--UCACCC-UGGU- -5'
10321 3' -62.3 NC_002687.1 + 45719 0.69 0.665872
Target:  5'- gGGGAaaGGCGcGGACCAGgGGGAgaagagccCCAa -3'
miRNA:   3'- gCCCUggUCGC-CCUGGUCaCCCU--------GGU- -5'
10321 3' -62.3 NC_002687.1 + 45767 0.67 0.790166
Target:  5'- gGGGGaaGGCGcGGACCAGgGGGAg-- -3'
miRNA:   3'- gCCCUggUCGC-CCUGGUCaCCCUggu -5'
10321 3' -62.3 NC_002687.1 + 57458 0.68 0.729726
Target:  5'- aCGGGuCUAGCgucGGGGCC-GUcGGACCAc -3'
miRNA:   3'- -GCCCuGGUCG---CCCUGGuCAcCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 85641 0.78 0.24971
Target:  5'- aCGGGACCAGgGaggccuuguGGGCCAGcGGGACCc -3'
miRNA:   3'- -GCCCUGGUCgC---------CCUGGUCaCCCUGGu -5'
10321 3' -62.3 NC_002687.1 + 85668 0.72 0.492514
Target:  5'- aCGGGACCGaCGGGACCcAc-GGGACCc -3'
miRNA:   3'- -GCCCUGGUcGCCCUGG-UcaCCCUGGu -5'
10321 3' -62.3 NC_002687.1 + 85695 0.89 0.046656
Target:  5'- aCGGGACCcGCGGGACCGaUGGGACCGa -3'
miRNA:   3'- -GCCCUGGuCGCCCUGGUcACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 85808 0.74 0.371437
Target:  5'- gGGGACCGGUGGGACCc--GGcGGCCc -3'
miRNA:   3'- gCCCUGGUCGCCCUGGucaCC-CUGGu -5'
10321 3' -62.3 NC_002687.1 + 85863 0.85 0.090188
Target:  5'- gCGGGACCAGCGGGuCCAG-GGaGGCCGc -3'
miRNA:   3'- -GCCCUGGUCGCCCuGGUCaCC-CUGGU- -5'
10321 3' -62.3 NC_002687.1 + 86049 0.68 0.738624
Target:  5'- gCGGGGCCAGaCGGG-CCuGUGucACCc -3'
miRNA:   3'- -GCCCUGGUC-GCCCuGGuCACccUGGu -5'
10321 3' -62.3 NC_002687.1 + 86076 1.05 0.003812
Target:  5'- gCGGGGCCAGCGGGGCCAGUGGGGCCAg -3'
miRNA:   3'- -GCCCUGGUCGCCCUGGUCACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 86165 1.08 0.00242
Target:  5'- gCGGGACCAGCGGGACCAGUGGGACCAg -3'
miRNA:   3'- -GCCCUGGUCGCCCUGGUCACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 86183 0.7 0.619448
Target:  5'- gCGGGACCAGCGGGACCAn-------- -3'
miRNA:   3'- -GCCCUGGUCGCCCUGGUcacccuggu -5'
10321 3' -62.3 NC_002687.1 + 86210 1.01 0.007339
Target:  5'- aCGGGACCAGCGGGACCAGcGGGACCAg -3'
miRNA:   3'- -GCCCUGGUCGCCCUGGUCaCCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 87471 0.7 0.600892
Target:  5'- uCGGGGgC-GUGGGACCGGUGuGGuuCCAu -3'
miRNA:   3'- -GCCCUgGuCGCCCUGGUCAC-CCu-GGU- -5'
10321 3' -62.3 NC_002687.1 + 93238 0.71 0.545846
Target:  5'- uGGGAUCAGCGGaACUucucaGGGACCAa -3'
miRNA:   3'- gCCCUGGUCGCCcUGGuca--CCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 98142 0.68 0.747446
Target:  5'- uGGuGCCAGCGGuGCCAGcGGuGCCAg -3'
miRNA:   3'- gCCcUGGUCGCCcUGGUCaCCcUGGU- -5'
10321 3' -62.3 NC_002687.1 + 172291 0.67 0.764832
Target:  5'- gGGGAaCGGUGGGGgCgggGGUGGGACa- -3'
miRNA:   3'- gCCCUgGUCGCCCUgG---UCACCCUGgu -5'
10321 3' -62.3 NC_002687.1 + 173454 0.67 0.790166
Target:  5'- uGGGACUggaGGUGGGACUggaggcgcaAGUGGaGGCgCAa -3'
miRNA:   3'- gCCCUGG---UCGCCCUGG---------UCACC-CUG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.