miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10321 5' -55.2 NC_002687.1 + 86130 1.11 0.00519
Target:  5'- gUCUGAACCCUUGGCACCCUUGGCACCc -3'
miRNA:   3'- -AGACUUGGGAACCGUGGGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 87908 1.01 0.024823
Target:  5'- --gGAGCCCUUGGCGCCCUUGGCGCCc -3'
miRNA:   3'- agaCUUGGGAACCGUGGGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 103400 0.79 0.461402
Target:  5'- gCUGcAgCCUUGGCGgCCUUGGCugCa -3'
miRNA:   3'- aGACuUgGGAACCGUgGGAACCGugG- -5'
10321 5' -55.2 NC_002687.1 + 85775 0.78 0.49768
Target:  5'- cCUGAggGCCCUgagcaccGGCGCCCUUGGauuuGCCg -3'
miRNA:   3'- aGACU--UGGGAa------CCGUGGGAACCg---UGG- -5'
10321 5' -55.2 NC_002687.1 + 225107 0.74 0.747998
Target:  5'- ---cGACCCUUGaCACCUUgaUGGCACCg -3'
miRNA:   3'- agacUUGGGAACcGUGGGA--ACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 210348 0.74 0.747998
Target:  5'- aUCUGcACCaccGGCACCacgGGCACCa -3'
miRNA:   3'- -AGACuUGGgaaCCGUGGgaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 553 0.73 0.766344
Target:  5'- aUCUGAGuugagUGGUACCCUUGGUugCg -3'
miRNA:   3'- -AGACUUggga-ACCGUGGGAACCGugG- -5'
10321 5' -55.2 NC_002687.1 + 117649 0.73 0.766344
Target:  5'- cCUGcAACCgaUGGCGCCUgccaugccuaUGGCACCu -3'
miRNA:   3'- aGAC-UUGGgaACCGUGGGa---------ACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 333749 0.73 0.766344
Target:  5'- aUCUGAGuugagUGGUACCCUUGGUugCg -3'
miRNA:   3'- -AGACUUggga-ACCGUGGGAACCGugG- -5'
10321 5' -55.2 NC_002687.1 + 334874 0.73 0.766344
Target:  5'- aUCUGAGuugagUGGUACCCUUGGUugCg -3'
miRNA:   3'- -AGACUUggga-ACCGUGGGAACCGugG- -5'
10321 5' -55.2 NC_002687.1 + 1606 0.73 0.766344
Target:  5'- aUCUGAGuugagUGGUACCCUUGGUugCg -3'
miRNA:   3'- -AGACUUggga-ACCGUGGGAACCGugG- -5'
10321 5' -55.2 NC_002687.1 + 299246 0.73 0.775357
Target:  5'- cCUGAAuUCCUUGGCcgcGCCCgagGGCAgCa -3'
miRNA:   3'- aGACUU-GGGAACCG---UGGGaa-CCGUgG- -5'
10321 5' -55.2 NC_002687.1 + 85995 0.73 0.784252
Target:  5'- gCUGGcCCCUgaaUACCUUUGGCACCa -3'
miRNA:   3'- aGACUuGGGAaccGUGGGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 275691 0.73 0.79302
Target:  5'- uUCguauGCCaacaGCGCCCUUGGCGCCa -3'
miRNA:   3'- -AGacu-UGGgaacCGUGGGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 209868 0.72 0.826684
Target:  5'- -gUGGugCCUgUGGUGCCCgUGGUGCCc -3'
miRNA:   3'- agACUugGGA-ACCGUGGGaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 252591 0.72 0.826684
Target:  5'- --aGAGCCgUcUGGCGCCCgaaacucgUGGCGCUc -3'
miRNA:   3'- agaCUUGGgA-ACCGUGGGa-------ACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 97799 0.71 0.857746
Target:  5'- gCUG-GCCCaccGGCACCaucGGCACCg -3'
miRNA:   3'- aGACuUGGGaa-CCGUGGgaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 125443 0.71 0.865057
Target:  5'- aUUGAGgCaacGGCGCCCUUugugGGCACCa -3'
miRNA:   3'- aGACUUgGgaaCCGUGGGAA----CCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 97825 0.71 0.879094
Target:  5'- gCUGGcACUgcUGGCACCgcUGGCACCg -3'
miRNA:   3'- aGACU-UGGgaACCGUGGgaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 126686 0.7 0.892322
Target:  5'- --aGAACCaagcGCGCCCUugaUGGCGCCc -3'
miRNA:   3'- agaCUUGGgaacCGUGGGA---ACCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.