miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10321 5' -55.2 NC_002687.1 + 553 0.73 0.766344
Target:  5'- aUCUGAGuugagUGGUACCCUUGGUugCg -3'
miRNA:   3'- -AGACUUggga-ACCGUGGGAACCGugG- -5'
10321 5' -55.2 NC_002687.1 + 1606 0.73 0.766344
Target:  5'- aUCUGAGuugagUGGUACCCUUGGUugCg -3'
miRNA:   3'- -AGACUUggga-ACCGUGGGAACCGugG- -5'
10321 5' -55.2 NC_002687.1 + 2860 0.67 0.9753
Target:  5'- --cGGuCUCgagGGCGCCgaUGGCGCCu -3'
miRNA:   3'- agaCUuGGGaa-CCGUGGgaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 8260 0.66 0.983723
Target:  5'- uUCUGuaaCCUUGGagUACCUaUGGCGCa -3'
miRNA:   3'- -AGACuugGGAACC--GUGGGaACCGUGg -5'
10321 5' -55.2 NC_002687.1 + 18243 0.67 0.978547
Target:  5'- --cGGACUCUUGaaGCGCCgcugcggccgcaacgCUUGGCACUg -3'
miRNA:   3'- agaCUUGGGAAC--CGUGG---------------GAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 37278 0.66 0.988454
Target:  5'- gUUGaAACCUgUGGC-CCCgaaUGGCGCa -3'
miRNA:   3'- aGAC-UUGGGaACCGuGGGa--ACCGUGg -5'
10321 5' -55.2 NC_002687.1 + 68412 0.69 0.936658
Target:  5'- --cGaAACCCUgauggUGGCACCC--GGUGCCg -3'
miRNA:   3'- agaC-UUGGGA-----ACCGUGGGaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 77108 0.7 0.916236
Target:  5'- gUCgGGGCCCUcgGGaCACCCUUGGgGa- -3'
miRNA:   3'- -AGaCUUGGGAa-CC-GUGGGAACCgUgg -5'
10321 5' -55.2 NC_002687.1 + 80970 0.68 0.960778
Target:  5'- --cGAccaccGCCa-UGGCACCCUUGGacuCGCCu -3'
miRNA:   3'- agaCU-----UGGgaACCGUGGGAACC---GUGG- -5'
10321 5' -55.2 NC_002687.1 + 85296 0.66 0.985439
Target:  5'- cCUGGuCCCgUGGguCCCgUGGguCCc -3'
miRNA:   3'- aGACUuGGGaACCguGGGaACCguGG- -5'
10321 5' -55.2 NC_002687.1 + 85509 0.69 0.936658
Target:  5'- cCUGGACCCgcUGGU-CCCgccGGCGCg -3'
miRNA:   3'- aGACUUGGGa-ACCGuGGGaa-CCGUGg -5'
10321 5' -55.2 NC_002687.1 + 85703 0.66 0.983723
Target:  5'- gUCUGGcCCCgcUGGC-CCCacUGGCcCCg -3'
miRNA:   3'- -AGACUuGGGa-ACCGuGGGa-ACCGuGG- -5'
10321 5' -55.2 NC_002687.1 + 85728 0.66 0.988454
Target:  5'- gUCUGcgaaaGGCCggUGGCACCCgccGG-ACCg -3'
miRNA:   3'- -AGAC-----UUGGgaACCGUGGGaa-CCgUGG- -5'
10321 5' -55.2 NC_002687.1 + 85775 0.78 0.49768
Target:  5'- cCUGAggGCCCUgagcaccGGCGCCCUUGGauuuGCCg -3'
miRNA:   3'- aGACU--UGGGAa------CCGUGGGAACCg---UGG- -5'
10321 5' -55.2 NC_002687.1 + 85919 0.68 0.953585
Target:  5'- cUUUGGGuCCUUUGGguCCCUcGGCuCCu -3'
miRNA:   3'- -AGACUU-GGGAACCguGGGAaCCGuGG- -5'
10321 5' -55.2 NC_002687.1 + 85995 0.73 0.784252
Target:  5'- gCUGGcCCCUgaaUACCUUUGGCACCa -3'
miRNA:   3'- aGACUuGGGAaccGUGGGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 86130 1.11 0.00519
Target:  5'- gUCUGAACCCUUGGCACCCUUGGCACCc -3'
miRNA:   3'- -AGACUUGGGAACCGUGGGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 86493 0.68 0.960778
Target:  5'- --cGuAGCCa-UGGCACCCaUGGgGCCg -3'
miRNA:   3'- agaC-UUGGgaACCGUGGGaACCgUGG- -5'
10321 5' -55.2 NC_002687.1 + 87533 0.67 0.970059
Target:  5'- gUCgGaAAUCCUccaagGGCGCCaagGGCGCCa -3'
miRNA:   3'- -AGaC-UUGGGAa----CCGUGGgaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 87908 1.01 0.024823
Target:  5'- --gGAGCCCUUGGCGCCCUUGGCGCCc -3'
miRNA:   3'- agaCUUGGGAACCGUGGGAACCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.