miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10321 5' -55.2 NC_002687.1 + 225107 0.74 0.747998
Target:  5'- ---cGACCCUUGaCACCUUgaUGGCACCg -3'
miRNA:   3'- agacUUGGGAACcGUGGGA--ACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 279138 0.67 0.979837
Target:  5'- --aGAGCaCCagUGGCACCUggGGCAg- -3'
miRNA:   3'- agaCUUG-GGa-ACCGUGGGaaCCGUgg -5'
10321 5' -55.2 NC_002687.1 + 8260 0.66 0.983723
Target:  5'- uUCUGuaaCCUUGGagUACCUaUGGCGCa -3'
miRNA:   3'- -AGACuugGGAACC--GUGGGaACCGUGg -5'
10321 5' -55.2 NC_002687.1 + 307854 0.66 0.988454
Target:  5'- --aGuGCCCcugugUUGGCGCCCUcGGuCACUu -3'
miRNA:   3'- agaCuUGGG-----AACCGUGGGAaCC-GUGG- -5'
10321 5' -55.2 NC_002687.1 + 275691 0.73 0.79302
Target:  5'- uUCguauGCCaacaGCGCCCUUGGCGCCa -3'
miRNA:   3'- -AGacu-UGGgaacCGUGGGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 209868 0.72 0.826684
Target:  5'- -gUGGugCCUgUGGUGCCCgUGGUGCCc -3'
miRNA:   3'- agACUugGGA-ACCGUGGGaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 97799 0.71 0.857746
Target:  5'- gCUG-GCCCaccGGCACCaucGGCACCg -3'
miRNA:   3'- aGACuUGGGaa-CCGUGGgaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 97825 0.71 0.879094
Target:  5'- gCUGGcACUgcUGGCACCgcUGGCACCg -3'
miRNA:   3'- aGACU-UGGgaACCGUGGgaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 85509 0.69 0.936658
Target:  5'- cCUGGACCCgcUGGU-CCCgccGGCGCg -3'
miRNA:   3'- aGACUUGGGa-ACCGuGGGaa-CCGUGg -5'
10321 5' -55.2 NC_002687.1 + 126068 0.67 0.977653
Target:  5'- cUUGAGCCC--GGCACCaa-GGCucGCCu -3'
miRNA:   3'- aGACUUGGGaaCCGUGGgaaCCG--UGG- -5'
10321 5' -55.2 NC_002687.1 + 200428 0.67 0.96716
Target:  5'- --cGAugCCgUGcGCGCCCUcGuGCGCCu -3'
miRNA:   3'- agaCUugGGaAC-CGUGGGAaC-CGUGG- -5'
10321 5' -55.2 NC_002687.1 + 134058 0.69 0.926887
Target:  5'- --gGAAaaaCCgc-GCGCUCUUGGCACCg -3'
miRNA:   3'- agaCUUg--GGaacCGUGGGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 117649 0.73 0.766344
Target:  5'- cCUGcAACCgaUGGCGCCUgccaugccuaUGGCACCu -3'
miRNA:   3'- aGAC-UUGGgaACCGUGGGa---------ACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 87533 0.67 0.970059
Target:  5'- gUCgGaAAUCCUccaagGGCGCCaagGGCGCCa -3'
miRNA:   3'- -AGaC-UUGGGAa----CCGUGGgaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 333749 0.73 0.766344
Target:  5'- aUCUGAGuugagUGGUACCCUUGGUugCg -3'
miRNA:   3'- -AGACUUggga-ACCGUGGGAACCGugG- -5'
10321 5' -55.2 NC_002687.1 + 126686 0.7 0.892322
Target:  5'- --aGAACCaagcGCGCCCUugaUGGCGCCc -3'
miRNA:   3'- agaCUUGGgaacCGUGGGA---ACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 2860 0.67 0.9753
Target:  5'- --cGGuCUCgagGGCGCCgaUGGCGCCu -3'
miRNA:   3'- agaCUuGGGaa-CCGUGGgaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 331763 0.66 0.981858
Target:  5'- aCUGAGCUCgaagaucccGCGCCgaUGGCACa -3'
miRNA:   3'- aGACUUGGGaac------CGUGGgaACCGUGg -5'
10321 5' -55.2 NC_002687.1 + 334874 0.73 0.766344
Target:  5'- aUCUGAGuugagUGGUACCCUUGGUugCg -3'
miRNA:   3'- -AGACUUggga-ACCGUGGGAACCGugG- -5'
10321 5' -55.2 NC_002687.1 + 252591 0.72 0.826684
Target:  5'- --aGAGCCgUcUGGCGCCCgaaacucgUGGCGCUc -3'
miRNA:   3'- agaCUUGGgA-ACCGUGGGa-------ACCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.