miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10323 3' -55.2 NC_002687.1 + 208411 0.66 0.988235
Target:  5'- gUGAcGACGacggUGGUGCCGagaACgACCCCAa -3'
miRNA:   3'- -ACUaCUGCgg--ACCAUGGU---UG-UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 328778 0.66 0.988235
Target:  5'- ---cGGCGaagcagCUGGUGCCAGCAUgCCu -3'
miRNA:   3'- acuaCUGCg-----GACCAUGGUUGUGgGGu -5'
10323 3' -55.2 NC_002687.1 + 85415 0.66 0.988235
Target:  5'- ---gGGCGCC-GGUGCuCAGgGCCCuCAg -3'
miRNA:   3'- acuaCUGCGGaCCAUG-GUUgUGGG-GU- -5'
10323 3' -55.2 NC_002687.1 + 208264 0.66 0.988235
Target:  5'- gUGAcGACGacggUGGUGCCGagaACgACCCCAa -3'
miRNA:   3'- -ACUaCUGCgg--ACCAUGGU---UG-UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 254794 0.66 0.988235
Target:  5'- -uGUGGCGUCgGGUAUCAcccugaggACGCCCUc -3'
miRNA:   3'- acUACUGCGGaCCAUGGU--------UGUGGGGu -5'
10323 3' -55.2 NC_002687.1 + 164648 0.66 0.986773
Target:  5'- aUGccGGUGCC-GGUGCCGAUGCCgCCAc -3'
miRNA:   3'- -ACuaCUGCGGaCCAUGGUUGUGG-GGU- -5'
10323 3' -55.2 NC_002687.1 + 300219 0.66 0.986773
Target:  5'- cGAUGAgGCaccguUGGUACCGcuucCACCgCCGa -3'
miRNA:   3'- aCUACUgCGg----ACCAUGGUu---GUGG-GGU- -5'
10323 3' -55.2 NC_002687.1 + 205066 0.66 0.985832
Target:  5'- aUGGUGACGUCc-GUGCCcacagcgugucccacGACACCgCCAg -3'
miRNA:   3'- -ACUACUGCGGacCAUGG---------------UUGUGG-GGU- -5'
10323 3' -55.2 NC_002687.1 + 307271 0.66 0.983435
Target:  5'- ---cGcCGCCgcccGUGCCAGCACCaCCAc -3'
miRNA:   3'- acuaCuGCGGac--CAUGGUUGUGG-GGU- -5'
10323 3' -55.2 NC_002687.1 + 250799 0.66 0.981544
Target:  5'- uUGAUGcACGUCUGcu-CCAACACCUUc -3'
miRNA:   3'- -ACUAC-UGCGGACcauGGUUGUGGGGu -5'
10323 3' -55.2 NC_002687.1 + 34967 0.67 0.979496
Target:  5'- cGAUGuACGCCaccGGUGCCccugucuuuGCACgCCAg -3'
miRNA:   3'- aCUAC-UGCGGa--CCAUGGu--------UGUGgGGU- -5'
10323 3' -55.2 NC_002687.1 + 214912 0.67 0.979496
Target:  5'- aGGUGugGCCaaGGUccGCCGcCGCCUCu -3'
miRNA:   3'- aCUACugCGGa-CCA--UGGUuGUGGGGu -5'
10323 3' -55.2 NC_002687.1 + 208314 0.67 0.979283
Target:  5'- gGAaagGACG-CUGGUGCCGACaacgacaccaaggACCUCAa -3'
miRNA:   3'- aCUa--CUGCgGACCAUGGUUG-------------UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 239181 0.67 0.977284
Target:  5'- gUGAUGugGCCUu-UAUCAugGCCaCCGa -3'
miRNA:   3'- -ACUACugCGGAccAUGGUugUGG-GGU- -5'
10323 3' -55.2 NC_002687.1 + 282883 0.67 0.974901
Target:  5'- cGAUGAUGCUUaccGGUAaaGACGCgCCAg -3'
miRNA:   3'- aCUACUGCGGA---CCAUggUUGUGgGGU- -5'
10323 3' -55.2 NC_002687.1 + 251986 0.67 0.97234
Target:  5'- aUGAgcgcGGCGCCgaggGGUACCGGCGuuuUCUCGg -3'
miRNA:   3'- -ACUa---CUGCGGa---CCAUGGUUGU---GGGGU- -5'
10323 3' -55.2 NC_002687.1 + 194911 0.67 0.97234
Target:  5'- gGAUGACGCCagGGUcuuGCUu-CGCCCa- -3'
miRNA:   3'- aCUACUGCGGa-CCA---UGGuuGUGGGgu -5'
10323 3' -55.2 NC_002687.1 + 19076 0.67 0.97234
Target:  5'- gGAUGACGCCagGGUcuuGCUu-CGCCCa- -3'
miRNA:   3'- aCUACUGCGGa-CCA---UGGuuGUGGGgu -5'
10323 3' -55.2 NC_002687.1 + 220503 0.67 0.97234
Target:  5'- gGAUGACGCCagGGUcuuGCUu-CGCCCa- -3'
miRNA:   3'- aCUACUGCGGa-CCA---UGGuuGUGGGgu -5'
10323 3' -55.2 NC_002687.1 + 200209 0.67 0.969597
Target:  5'- gGcgGAgGCC-GGUGCCAAagauuccgGCCCCGa -3'
miRNA:   3'- aCuaCUgCGGaCCAUGGUUg-------UGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.