miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10353 3' -51.7 NC_002687.1 + 226798 0.66 0.998207
Target:  5'- gGGAGCucCAGCu--GCCuGCGuAGCCGu -3'
miRNA:   3'- aUUUCG--GUCGuuuCGGuCGUuUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 314673 0.66 0.997014
Target:  5'- -cAGGCUaugaaaaaGGCAGAuGCCAGUGucGCCGc -3'
miRNA:   3'- auUUCGG--------UCGUUU-CGGUCGUuuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 330507 0.66 0.997014
Target:  5'- aAAAGCCAGCA----CGGCucAGCCa -3'
miRNA:   3'- aUUUCGGUCGUuucgGUCGuuUCGGc -5'
10353 3' -51.7 NC_002687.1 + 330872 0.66 0.998207
Target:  5'- -cAGGCCcGCucgcuGGCCAGCA--GCCu -3'
miRNA:   3'- auUUCGGuCGuu---UCGGUCGUuuCGGc -5'
10353 3' -51.7 NC_002687.1 + 73816 0.66 0.996493
Target:  5'- --cGGCCAGUcc-GCCGGCGAGuuuGCCc -3'
miRNA:   3'- auuUCGGUCGuuuCGGUCGUUU---CGGc -5'
10353 3' -51.7 NC_002687.1 + 155083 0.66 0.996493
Target:  5'- gAGGGUCAGCGucguGuCCAGCGAucccgcuacGGCCa -3'
miRNA:   3'- aUUUCGGUCGUuu--C-GGUCGUU---------UCGGc -5'
10353 3' -51.7 NC_002687.1 + 200298 0.66 0.996493
Target:  5'- -uGAGCCAcuguGCGGAcGCCAGCAAcauauguuuGGCgGa -3'
miRNA:   3'- auUUCGGU----CGUUU-CGGUCGUU---------UCGgC- -5'
10353 3' -51.7 NC_002687.1 + 285089 0.66 0.996965
Target:  5'- gAAGGCUGGUgcuuguuGGGGCgGGCGAuuuuGGCCGg -3'
miRNA:   3'- aUUUCGGUCG-------UUUCGgUCGUU----UCGGC- -5'
10353 3' -51.7 NC_002687.1 + 181627 0.66 0.997014
Target:  5'- ---uGCCGGCuuuuuGCCGGCuuuGCUGg -3'
miRNA:   3'- auuuCGGUCGuuu--CGGUCGuuuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 283195 0.66 0.997014
Target:  5'- aGGGGCggCAGCAccAGGCgCGGCGgGGGCCGu -3'
miRNA:   3'- aUUUCG--GUCGU--UUCG-GUCGU-UUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 11360 0.66 0.996493
Target:  5'- cGGAGCagCAGCAgcagAAGCCgcgguAGCAGuAGCCGc -3'
miRNA:   3'- aUUUCG--GUCGU----UUCGG-----UCGUU-UCGGC- -5'
10353 3' -51.7 NC_002687.1 + 70353 0.66 0.996493
Target:  5'- ---cGCUAGCAcaAAGaCCGcCAGAGCCGc -3'
miRNA:   3'- auuuCGGUCGU--UUC-GGUcGUUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 104323 0.66 0.998207
Target:  5'- gUAGAGCCAcGaacacaAAGGCCAGCGu--CCGa -3'
miRNA:   3'- -AUUUCGGU-Cg-----UUUCGGUCGUuucGGC- -5'
10353 3' -51.7 NC_002687.1 + 279637 0.66 0.998207
Target:  5'- -uGGGCCGGUGGuGCCGGCAccaccuGCUGc -3'
miRNA:   3'- auUUCGGUCGUUuCGGUCGUuu----CGGC- -5'
10353 3' -51.7 NC_002687.1 + 295672 0.66 0.998207
Target:  5'- ---cGCU-GCAGGGCCAGgGGAGuuGu -3'
miRNA:   3'- auuuCGGuCGUUUCGGUCgUUUCggC- -5'
10353 3' -51.7 NC_002687.1 + 212668 0.66 0.997469
Target:  5'- gGAuGCCAGC-GAGCCGGaguuCGAcGCCGc -3'
miRNA:   3'- aUUuCGGUCGuUUCGGUC----GUUuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 257372 0.66 0.997469
Target:  5'- -cGGGCCAGUguguaucgGAGGUgugCAGCAucGCCGc -3'
miRNA:   3'- auUUCGGUCG--------UUUCG---GUCGUuuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 236534 0.66 0.997294
Target:  5'- ---cGCCcGcCGAAGCCAGCAcuuuuuuaucuucGGCCGa -3'
miRNA:   3'- auuuCGGuC-GUUUCGGUCGUu------------UCGGC- -5'
10353 3' -51.7 NC_002687.1 + 146037 0.66 0.997014
Target:  5'- --cGGCgCAGCAGuccGCCAG--GGGCCGg -3'
miRNA:   3'- auuUCG-GUCGUUu--CGGUCguUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 3574 0.66 0.997014
Target:  5'- uUAGGGCCGGUgccGAcGUCGGagcaAAGGCCGa -3'
miRNA:   3'- -AUUUCGGUCG---UUuCGGUCg---UUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.