miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10353 3' -51.7 NC_002687.1 + 2005 0.66 0.997469
Target:  5'- -cAAGUCGGUGAAGUCAGCGuGGUa- -3'
miRNA:   3'- auUUCGGUCGUUUCGGUCGUuUCGgc -5'
10353 3' -51.7 NC_002687.1 + 3574 0.66 0.997014
Target:  5'- uUAGGGCCGGUgccGAcGUCGGagcaAAGGCCGa -3'
miRNA:   3'- -AUUUCGGUCG---UUuCGGUCg---UUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 9342 0.67 0.994466
Target:  5'- cAGAGUCAaccacGCugauGGGCCGGCAAaacaGGCCa -3'
miRNA:   3'- aUUUCGGU-----CGu---UUCGGUCGUU----UCGGc -5'
10353 3' -51.7 NC_002687.1 + 10821 0.77 0.711654
Target:  5'- uUGAAGCCAGCAucaacGGGCC--CGAGGCCGa -3'
miRNA:   3'- -AUUUCGGUCGU-----UUCGGucGUUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 11360 0.66 0.996493
Target:  5'- cGGAGCagCAGCAgcagAAGCCgcgguAGCAGuAGCCGc -3'
miRNA:   3'- aUUUCG--GUCGU----UUCGG-----UCGUU-UCGGC- -5'
10353 3' -51.7 NC_002687.1 + 13023 0.66 0.998207
Target:  5'- gAGAGCUGGUgAAAGgCAGCAGGGUa- -3'
miRNA:   3'- aUUUCGGUCG-UUUCgGUCGUUUCGgc -5'
10353 3' -51.7 NC_002687.1 + 18746 0.68 0.990395
Target:  5'- aGAAGCCuGCGAAGacggAGCAAcGCCa -3'
miRNA:   3'- aUUUCGGuCGUUUCgg--UCGUUuCGGc -5'
10353 3' -51.7 NC_002687.1 + 18899 0.68 0.990395
Target:  5'- -uGAGCCAGCcccAGCgAcGCAAAGCUc -3'
miRNA:   3'- auUUCGGUCGuu-UCGgU-CGUUUCGGc -5'
10353 3' -51.7 NC_002687.1 + 21446 0.73 0.870334
Target:  5'- gAAGGCCauucucgacagcggAGCAGAGCCAGacgaagaAGAGCUGg -3'
miRNA:   3'- aUUUCGG--------------UCGUUUCGGUCg------UUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 22166 0.69 0.98028
Target:  5'- -cGAGCCAGCc---CCGGCGAcGCCa -3'
miRNA:   3'- auUUCGGUCGuuucGGUCGUUuCGGc -5'
10353 3' -51.7 NC_002687.1 + 24077 0.67 0.995226
Target:  5'- ---cGCCAGCGAuGCCGGaGGGGCg- -3'
miRNA:   3'- auuuCGGUCGUUuCGGUCgUUUCGgc -5'
10353 3' -51.7 NC_002687.1 + 35483 0.75 0.816016
Target:  5'- --uAGCCgAGCuuGGCCGcGCAAAGCCu -3'
miRNA:   3'- auuUCGG-UCGuuUCGGU-CGUUUCGGc -5'
10353 3' -51.7 NC_002687.1 + 37451 0.75 0.78909
Target:  5'- ----uUCAGCAGGGgCGGCGGAGCCGa -3'
miRNA:   3'- auuucGGUCGUUUCgGUCGUUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 40425 0.69 0.98028
Target:  5'- -cGAGCCAGCc---CCGGCGAcGCCa -3'
miRNA:   3'- auUUCGGUCGuuucGGUCGUUuCGGc -5'
10353 3' -51.7 NC_002687.1 + 48772 0.66 0.997469
Target:  5'- ---uGCCAGCuucuGGCUAGguG-GCCGu -3'
miRNA:   3'- auuuCGGUCGuu--UCGGUCguUuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 55192 0.68 0.989079
Target:  5'- gGGAGCCAgGCAccAAcCCGGCcAAGGCCa -3'
miRNA:   3'- aUUUCGGU-CGU--UUcGGUCG-UUUCGGc -5'
10353 3' -51.7 NC_002687.1 + 57518 0.68 0.990014
Target:  5'- cUAGAGCCuGCAGgaagcucaacucauGGCCaucAGCGccGCCGa -3'
miRNA:   3'- -AUUUCGGuCGUU--------------UCGG---UCGUuuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 60283 0.73 0.893631
Target:  5'- aUGAGGCCAGCGAAGgCuGUcu-GCCGa -3'
miRNA:   3'- -AUUUCGGUCGUUUCgGuCGuuuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 60492 0.69 0.975572
Target:  5'- --cGGCgCAcGCAucGCCAGCu-GGCCGa -3'
miRNA:   3'- auuUCG-GU-CGUuuCGGUCGuuUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 64799 0.68 0.990395
Target:  5'- gAAAaCCAGCAaagGAGCCAGCAGuaCCa -3'
miRNA:   3'- aUUUcGGUCGU---UUCGGUCGUUucGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.