miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10353 3' -51.7 NC_002687.1 + 113776 0.8 0.558072
Target:  5'- gUGAAGCCAGCGuAAGcCCAGCAgagaaGAGCCc -3'
miRNA:   3'- -AUUUCGGUCGU-UUC-GGUCGU-----UUCGGc -5'
10353 3' -51.7 NC_002687.1 + 55192 0.68 0.989079
Target:  5'- gGGAGCCAgGCAccAAcCCGGCcAAGGCCa -3'
miRNA:   3'- aUUUCGGU-CGU--UUcGGUCG-UUUCGGc -5'
10353 3' -51.7 NC_002687.1 + 80578 0.68 0.991584
Target:  5'- -cAAGCCAG-AAAGUCAGacuGGAGCCu -3'
miRNA:   3'- auUUCGGUCgUUUCGGUCg--UUUCGGc -5'
10353 3' -51.7 NC_002687.1 + 330872 0.66 0.998207
Target:  5'- -cAGGCCcGCucgcuGGCCAGCA--GCCu -3'
miRNA:   3'- auUUCGGuCGuu---UCGGUCGUuuCGGc -5'
10353 3' -51.7 NC_002687.1 + 21446 0.73 0.870334
Target:  5'- gAAGGCCauucucgacagcggAGCAGAGCCAGacgaagaAGAGCUGg -3'
miRNA:   3'- aUUUCGG--------------UCGUUUCGGUCg------UUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 293716 0.73 0.886832
Target:  5'- ---uGCUugAGCAGGGgCGGCGGGGCCGa -3'
miRNA:   3'- auuuCGG--UCGUUUCgGUCGUUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 158758 0.72 0.906528
Target:  5'- gAAAGCCgcgGGCGAGGCCGGUgcaacacuaGucGCCGa -3'
miRNA:   3'- aUUUCGG---UCGUUUCGGUCG---------UuuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 224850 0.72 0.929448
Target:  5'- gAGAGCCgccgacgcGGCGgcGCCGGCAcGGUCGg -3'
miRNA:   3'- aUUUCGG--------UCGUuuCGGUCGUuUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 60492 0.69 0.975572
Target:  5'- --cGGCgCAcGCAucGCCAGCu-GGCCGa -3'
miRNA:   3'- auuUCG-GU-CGUuuCGGUCGuuUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 159945 0.68 0.986028
Target:  5'- gGAAGCCGGgGcGGCCAagGCAGccGCCGc -3'
miRNA:   3'- aUUUCGGUCgUuUCGGU--CGUUu-CGGC- -5'
10353 3' -51.7 NC_002687.1 + 274642 0.69 0.982363
Target:  5'- gUAGAGUCAGCAAGguGCCGGaugacaaaUAGGGCCu -3'
miRNA:   3'- -AUUUCGGUCGUUU--CGGUC--------GUUUCGGc -5'
10353 3' -51.7 NC_002687.1 + 179395 0.7 0.972931
Target:  5'- gGAGGCCGGCAAaguAGCCccuGUugcAGCCa -3'
miRNA:   3'- aUUUCGGUCGUU---UCGGu--CGuu-UCGGc -5'
10353 3' -51.7 NC_002687.1 + 37451 0.75 0.78909
Target:  5'- ----uUCAGCAGGGgCGGCGGAGCCGa -3'
miRNA:   3'- auuucGGUCGUUUCgGUCGUUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 236747 0.69 0.982363
Target:  5'- gGAAGCC-GCGuGAGCCuGCccAGCCGc -3'
miRNA:   3'- aUUUCGGuCGU-UUCGGuCGuuUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 299486 0.75 0.798221
Target:  5'- gAAGGCCGGUcAGGUCGGCAAGGUgGu -3'
miRNA:   3'- aUUUCGGUCGuUUCGGUCGUUUCGgC- -5'
10353 3' -51.7 NC_002687.1 + 295691 0.71 0.934572
Target:  5'- aUAGAGCgcggugCAGCGGAG-CAGCGGGGCUGa -3'
miRNA:   3'- -AUUUCG------GUCGUUUCgGUCGUUUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 328828 0.68 0.986028
Target:  5'- gUGAGGaCAGCGGGGUCAaCGGGGCCa -3'
miRNA:   3'- -AUUUCgGUCGUUUCGGUcGUUUCGGc -5'
10353 3' -51.7 NC_002687.1 + 297498 0.68 0.990395
Target:  5'- gUGGAGgCGGCAAGGCuCGGCAuaucGaCCGg -3'
miRNA:   3'- -AUUUCgGUCGUUUCG-GUCGUuu--C-GGC- -5'
10353 3' -51.7 NC_002687.1 + 206850 0.74 0.857398
Target:  5'- aGAGGCCAGCAAAGUaGGUGucuguGCCGg -3'
miRNA:   3'- aUUUCGGUCGUUUCGgUCGUuu---CGGC- -5'
10353 3' -51.7 NC_002687.1 + 60283 0.73 0.893631
Target:  5'- aUGAGGCCAGCGAAGgCuGUcu-GCCGa -3'
miRNA:   3'- -AUUUCGGUCGUUUCgGuCGuuuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.