miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10353 5' -55.5 NC_002687.1 + 181968 1.08 0.005657
Target:  5'- aGCCGGCAAAGCCAGCAAAGCCAGCAAa -3'
miRNA:   3'- -CGGCCGUUUCGGUCGUUUCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 182007 1.05 0.009749
Target:  5'- aGCCGGUAAAGCCAGCAAAGCCAGCAAa -3'
miRNA:   3'- -CGGCCGUUUCGGUCGUUUCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 182034 0.98 0.0288
Target:  5'- aGCCaGCAAAGCCAGCAAAGCCAGCAa -3'
miRNA:   3'- -CGGcCGUUUCGGUCGUUUCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 86090 0.91 0.075166
Target:  5'- gGCCaGCGGGGCCAGCGGGGCCAGCGGg -3'
miRNA:   3'- -CGGcCGUUUCGGUCGUUUCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 98148 0.82 0.257734
Target:  5'- uGCCGGUGGuGCCAGCGGuGCCAGCGGu -3'
miRNA:   3'- -CGGCCGUUuCGGUCGUUuCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 86063 0.8 0.324085
Target:  5'- gGCCaGUggGGCCAGCGGGGCCAGaCGGg -3'
miRNA:   3'- -CGGcCGuuUCGGUCGUUUCGGUC-GUU- -5'
10353 5' -55.5 NC_002687.1 + 98184 0.79 0.394
Target:  5'- uGCCaGCGGuGCCAGCAGuGCCAGCGGu -3'
miRNA:   3'- -CGGcCGUUuCGGUCGUUuCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 181941 0.78 0.454711
Target:  5'- aGCUaGCAAAGCCGGCAAAGCCAa--- -3'
miRNA:   3'- -CGGcCGUUUCGGUCGUUUCGGUcguu -5'
10353 5' -55.5 NC_002687.1 + 113773 0.76 0.529796
Target:  5'- -aUGGUGAAGCCAGCGuAAGCCcAGCAGa -3'
miRNA:   3'- cgGCCGUUUCGGUCGU-UUCGG-UCGUU- -5'
10353 5' -55.5 NC_002687.1 + 1992 0.75 0.598933
Target:  5'- aGUCGGCAgcaagcAAGUCGGUGAAGUCAGCGu -3'
miRNA:   3'- -CGGCCGU------UUCGGUCGUUUCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 224863 0.74 0.649137
Target:  5'- -gCGGCGgcGCCGGCAcGGUCGGCAc -3'
miRNA:   3'- cgGCCGUuuCGGUCGUuUCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 261602 0.74 0.659169
Target:  5'- cGCCGGCAagauGAGCU-GCAuGGGUCAGCAAu -3'
miRNA:   3'- -CGGCCGU----UUCGGuCGU-UUCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 325508 0.74 0.669181
Target:  5'- -aCGGCGguacAGGCCGGCcacGCCAGCAAa -3'
miRNA:   3'- cgGCCGU----UUCGGUCGuuuCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 97824 0.73 0.689108
Target:  5'- cGCUGGCAcuGCUGGCAccGCUGGCAc -3'
miRNA:   3'- -CGGCCGUuuCGGUCGUuuCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 308422 0.73 0.708852
Target:  5'- cCCGGCGAccCCGGCGGGGCgGGCGc -3'
miRNA:   3'- cGGCCGUUucGGUCGUUUCGgUCGUu -5'
10353 5' -55.5 NC_002687.1 + 135802 0.73 0.718635
Target:  5'- cGCCGGgAAucauGGCCGGCAacGAGUCuGCGAa -3'
miRNA:   3'- -CGGCCgUU----UCGGUCGU--UUCGGuCGUU- -5'
10353 5' -55.5 NC_002687.1 + 270553 0.72 0.728346
Target:  5'- uGCCGGCGAGGUCGGCc--GCCuGGUAu -3'
miRNA:   3'- -CGGCCGUUUCGGUCGuuuCGG-UCGUu -5'
10353 5' -55.5 NC_002687.1 + 328776 0.72 0.737977
Target:  5'- aUCGGCGAAG-CAGCugguGCCAGCAu -3'
miRNA:   3'- cGGCCGUUUCgGUCGuuu-CGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 85868 0.72 0.756963
Target:  5'- cGCCGGCGGGaCCAGCGGGuCCAGgGAg -3'
miRNA:   3'- -CGGCCGUUUcGGUCGUUUcGGUCgUU- -5'
10353 5' -55.5 NC_002687.1 + 71670 0.72 0.775524
Target:  5'- cGUCGGgAAGGUCGGCGAuguuugGGUCAGCGGu -3'
miRNA:   3'- -CGGCCgUUUCGGUCGUU------UCGGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.