miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10353 5' -55.5 NC_002687.1 + 1992 0.75 0.598933
Target:  5'- aGUCGGCAgcaagcAAGUCGGUGAAGUCAGCGu -3'
miRNA:   3'- -CGGCCGU------UUCGGUCGUUUCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 13011 0.67 0.952157
Target:  5'- aGCaCGGCAgcagaGAGCUGGUgAAAGgCAGCAGg -3'
miRNA:   3'- -CG-GCCGU-----UUCGGUCG-UUUCgGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 21436 0.66 0.968455
Target:  5'- uGgCGGUgaugAAGGCCauucucgacagcggAGCAGAGCCAGaCGAa -3'
miRNA:   3'- -CgGCCG----UUUCGG--------------UCGUUUCGGUC-GUU- -5'
10353 5' -55.5 NC_002687.1 + 35482 0.7 0.836159
Target:  5'- aGCCGaGCuuGGCCGcGCAAAGCCuGaCGGa -3'
miRNA:   3'- -CGGC-CGuuUCGGU-CGUUUCGGuC-GUU- -5'
10353 5' -55.5 NC_002687.1 + 71670 0.72 0.775524
Target:  5'- cGUCGGgAAGGUCGGCGAuguuugGGUCAGCGGu -3'
miRNA:   3'- -CGGCCgUUUCGGUCGUU------UCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 85868 0.72 0.756963
Target:  5'- cGCCGGCGGGaCCAGCGGGuCCAGgGAg -3'
miRNA:   3'- -CGGCCGUUUcGGUCGUUUcGGUCgUU- -5'
10353 5' -55.5 NC_002687.1 + 86063 0.8 0.324085
Target:  5'- gGCCaGUggGGCCAGCGGGGCCAGaCGGg -3'
miRNA:   3'- -CGGcCGuuUCGGUCGUUUCGGUC-GUU- -5'
10353 5' -55.5 NC_002687.1 + 86090 0.91 0.075166
Target:  5'- gGCCaGCGGGGCCAGCGGGGCCAGCGGg -3'
miRNA:   3'- -CGGcCGUUUCGGUCGUUUCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 89940 0.69 0.89468
Target:  5'- cGCUGGCGGAGUCGGCAucGUCcuucucuacGCAAu -3'
miRNA:   3'- -CGGCCGUUUCGGUCGUuuCGGu--------CGUU- -5'
10353 5' -55.5 NC_002687.1 + 96344 0.66 0.963097
Target:  5'- cGCCGGCA---UgAGCAAGGaCAGCAc -3'
miRNA:   3'- -CGGCCGUuucGgUCGUUUCgGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 97780 0.69 0.874272
Target:  5'- uGCUGGCAccGCUGGCAccGCUGGCc- -3'
miRNA:   3'- -CGGCCGUuuCGGUCGUuuCGGUCGuu -5'
10353 5' -55.5 NC_002687.1 + 97824 0.73 0.689108
Target:  5'- cGCUGGCAcuGCUGGCAccGCUGGCAc -3'
miRNA:   3'- -CGGCCGUuuCGGUCGUuuCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 98148 0.82 0.257734
Target:  5'- uGCCGGUGGuGCCAGCGGuGCCAGCGGu -3'
miRNA:   3'- -CGGCCGUUuCGGUCGUUuCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 98184 0.79 0.394
Target:  5'- uGCCaGCGGuGCCAGCAGuGCCAGCGGu -3'
miRNA:   3'- -CGGcCGUUuCGGUCGUUuCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 113773 0.76 0.529796
Target:  5'- -aUGGUGAAGCCAGCGuAAGCCcAGCAGa -3'
miRNA:   3'- cgGCCGUUUCGGUCGU-UUCGG-UCGUU- -5'
10353 5' -55.5 NC_002687.1 + 135802 0.73 0.718635
Target:  5'- cGCCGGgAAucauGGCCGGCAacGAGUCuGCGAa -3'
miRNA:   3'- -CGGCCgUU----UCGGUCGU--UUCGGuCGUU- -5'
10353 5' -55.5 NC_002687.1 + 146094 0.67 0.95602
Target:  5'- uGUCGGC--GGCCAGCGc--CCAGUAGu -3'
miRNA:   3'- -CGGCCGuuUCGGUCGUuucGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 154123 0.66 0.972161
Target:  5'- uGCCGaugucGCAGuugccaauAGCCAGCcGAGUCAGUg- -3'
miRNA:   3'- -CGGC-----CGUU--------UCGGUCGuUUCGGUCGuu -5'
10353 5' -55.5 NC_002687.1 + 157204 0.66 0.963097
Target:  5'- aGCUGGUucAGCCAGUAGuccGCCA-CAAa -3'
miRNA:   3'- -CGGCCGuuUCGGUCGUUu--CGGUcGUU- -5'
10353 5' -55.5 NC_002687.1 + 158751 0.68 0.913101
Target:  5'- gGCCGcugAAAGCCgcgGGCGAGGCCGGUg- -3'
miRNA:   3'- -CGGCcg-UUUCGG---UCGUUUCGGUCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.