miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10353 5' -55.5 NC_002687.1 + 113773 0.76 0.529796
Target:  5'- -aUGGUGAAGCCAGCGuAAGCCcAGCAGa -3'
miRNA:   3'- cgGCCGUUUCGGUCGU-UUCGG-UCGUU- -5'
10353 5' -55.5 NC_002687.1 + 214987 0.67 0.959665
Target:  5'- aCCGGCGGGGCCG---AGGgCGGCGAc -3'
miRNA:   3'- cGGCCGUUUCGGUcguUUCgGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 166278 0.66 0.96632
Target:  5'- uGCCGaG-AGGGUgAGCAcGGCCGGCGc -3'
miRNA:   3'- -CGGC-CgUUUCGgUCGUuUCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 308470 0.66 0.97479
Target:  5'- aCCGGaGAAGCUgGGCAGAGCUAcGCGg -3'
miRNA:   3'- cGGCCgUUUCGG-UCGUUUCGGU-CGUu -5'
10353 5' -55.5 NC_002687.1 + 308422 0.73 0.708852
Target:  5'- cCCGGCGAccCCGGCGGGGCgGGCGc -3'
miRNA:   3'- cGGCCGUUucGGUCGUUUCGgUCGUu -5'
10353 5' -55.5 NC_002687.1 + 328776 0.72 0.737977
Target:  5'- aUCGGCGAAG-CAGCugguGCCAGCAu -3'
miRNA:   3'- cGGCCGUUUCgGUCGuuu-CGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 159948 0.7 0.827974
Target:  5'- aGCCGGgGcGGCCaaGGCAgccgccgccaAGGCCAGUAAg -3'
miRNA:   3'- -CGGCCgUuUCGG--UCGU----------UUCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 299489 0.7 0.827974
Target:  5'- gGCCGGUcAGGUCGGCAAGGUggucaAGCGg -3'
miRNA:   3'- -CGGCCGuUUCGGUCGUUUCGg----UCGUu -5'
10353 5' -55.5 NC_002687.1 + 206832 0.69 0.885398
Target:  5'- uGCCGGagacgguggcgaaGAGGCCAGCAAAGUaGGUg- -3'
miRNA:   3'- -CGGCCg------------UUUCGGUCGUUUCGgUCGuu -5'
10353 5' -55.5 NC_002687.1 + 13011 0.67 0.952157
Target:  5'- aGCaCGGCAgcagaGAGCUGGUgAAAGgCAGCAGg -3'
miRNA:   3'- -CG-GCCGU-----UUCGGUCG-UUUCgGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 214439 0.68 0.924242
Target:  5'- -aUGGCAcAGCCAGUc-AGUCGGCAAu -3'
miRNA:   3'- cgGCCGUuUCGGUCGuuUCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 97780 0.69 0.874272
Target:  5'- uGCUGGCAccGCUGGCAccGCUGGCc- -3'
miRNA:   3'- -CGGCCGUuuCGGUCGUuuCGGUCGuu -5'
10353 5' -55.5 NC_002687.1 + 1992 0.75 0.598933
Target:  5'- aGUCGGCAgcaagcAAGUCGGUGAAGUCAGCGu -3'
miRNA:   3'- -CGGCCGU------UUCGGUCGUUUCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 239858 0.68 0.924242
Target:  5'- uGCUGGCAAgaGGaaAGCGAAGCCuGuCAAa -3'
miRNA:   3'- -CGGCCGUU--UCggUCGUUUCGGuC-GUU- -5'
10353 5' -55.5 NC_002687.1 + 224863 0.74 0.649137
Target:  5'- -gCGGCGgcGCCGGCAcGGUCGGCAc -3'
miRNA:   3'- cgGCCGUuuCGGUCGUuUCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 279284 0.7 0.859615
Target:  5'- uGCCGGCAccaCCGGCccaccagaAGAGUCAGCGGa -3'
miRNA:   3'- -CGGCCGUuucGGUCG--------UUUCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 200285 0.67 0.943763
Target:  5'- uGUCGcGCucuguuGAGCCAcuguGCGGAcGCCAGCAAc -3'
miRNA:   3'- -CGGC-CGu-----UUCGGU----CGUUU-CGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 157204 0.66 0.963097
Target:  5'- aGCUGGUucAGCCAGUAGuccGCCA-CAAa -3'
miRNA:   3'- -CGGCCGuuUCGGUCGUUu--CGGUcGUU- -5'
10353 5' -55.5 NC_002687.1 + 97824 0.73 0.689108
Target:  5'- cGCUGGCAcuGCUGGCAccGCUGGCAc -3'
miRNA:   3'- -CGGCCGUuuCGGUCGUuuCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 181618 0.71 0.784624
Target:  5'- uGCUGGCuuuGCCGGCuuuuuGCCGGCu- -3'
miRNA:   3'- -CGGCCGuuuCGGUCGuuu--CGGUCGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.