miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10386 5' -54.9 NC_002687.1 + 228868 1.06 0.010262
Target:  5'- gUGAGCUACACACCCCUUUGUCCCCUUa -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52989 1.06 0.010262
Target:  5'- gUGAGCUGCACACCCCUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228180 1.06 0.010262
Target:  5'- gUGAGCUACACACCCCUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228350 1.06 0.010262
Target:  5'- gUGAGCUACACACCCCUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229645 1.06 0.010262
Target:  5'- gUGAGCUACACACCCCUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 53118 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228220 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229191 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228285 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUa -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228479 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228997 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52541 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52411 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51065 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51000 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 50935 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229515 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229450 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229385 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229062 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.