miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10386 5' -54.9 NC_002687.1 + 52989 1.06 0.010262
Target:  5'- gUGAGCUGCACACCCCUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52222 0.98 0.033476
Target:  5'- gUGAGCUGCACACCCgUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGgAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52671 0.98 0.033476
Target:  5'- gUGAGCUGCACACCCgUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGgAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 45151 0.66 0.984309
Target:  5'- ---cCUGCACACUUCUUUG-CCCCa- -3'
miRNA:   3'- acucGAUGUGUGGGGAAACaGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 52411 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52541 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 53183 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 53312 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 54101 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 54700 1.01 0.021236
Target:  5'- gUGAGCUGCACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 54295 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 53635 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 50935 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 54360 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51000 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 53441 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 54489 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52606 0.98 0.033476
Target:  5'- gUGAGCUGCACACCCgUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGgAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51065 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 53118 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.