miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10386 5' -54.9 NC_002687.1 + 10082 0.7 0.898396
Target:  5'- gGGGUguaGCACcCCCCUccGUCCCCg- -3'
miRNA:   3'- aCUCGa--UGUGuGGGGAaaCAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 17187 0.68 0.946034
Target:  5'- --cGCUGCuAgACCCCUcgGUCUCCUg -3'
miRNA:   3'- acuCGAUG-UgUGGGGAaaCAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 44915 0.67 0.961388
Target:  5'- gGAGCUGCAUugCUUUgcuUCCCCa- -3'
miRNA:   3'- aCUCGAUGUGugGGGAaacAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 45151 0.66 0.984309
Target:  5'- ---cCUGCACACUUCUUUG-CCCCa- -3'
miRNA:   3'- acucGAUGUGUGGGGAAACaGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 50935 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51000 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51065 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51130 0.79 0.462826
Target:  5'- gUGAGCUACGCACaCUgUUGUCCCCa- -3'
miRNA:   3'- -ACUCGAUGUGUGgGGaAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 51211 0.84 0.235017
Target:  5'- gUGAaCUGCACACCCUUUUGUCCCCc- -3'
miRNA:   3'- -ACUcGAUGUGUGGGGAAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 51276 0.84 0.235017
Target:  5'- gUGAGCUAUGCACCUUUUUGUCCUCUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 51340 0.92 0.084276
Target:  5'- gUGAGCUACACACgCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGgGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51946 0.7 0.891981
Target:  5'- gUGAGaUGCACuCCUUUUUGUCCUCUUg -3'
miRNA:   3'- -ACUCgAUGUGuGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52011 0.93 0.068404
Target:  5'- gUGAGCUACACACCCUUUUGUCCCgUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGgAA- -5'
10386 5' -54.9 NC_002687.1 + 52076 0.8 0.410241
Target:  5'- gUGAGCUACGCACaCUgUUGUCCCCUc -3'
miRNA:   3'- -ACUCGAUGUGUGgGGaAACAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 52157 0.84 0.235017
Target:  5'- gUGAGCUGCACACaUUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGgGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52222 0.98 0.033476
Target:  5'- gUGAGCUGCACACCCgUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGgAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52287 0.93 0.072079
Target:  5'- gUGAGCUGCACACCUUUUUGUCCCCa- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 52368 0.93 0.072079
Target:  5'- gUGAGCUGCACACCUUUUUGUCCCCa- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 52411 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52476 0.94 0.063228
Target:  5'- gUGAGCUGCACACCCUUUcGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAaCAGGGGAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.