miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10388 3' -52.5 NC_002687.1 + 224278 0.66 0.996795
Target:  5'- -cGAUgCCGaUGCCGAUGcUGAUGGCGa -3'
miRNA:   3'- uaCUA-GGC-ACGGUUGCuGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 65184 0.66 0.996795
Target:  5'- cUGGUaccgCUGUGUCAugGACAccGGCGa -3'
miRNA:   3'- uACUA----GGCACGGUugCUGUuaCCGUa -5'
10388 3' -52.5 NC_002687.1 + 90863 0.66 0.996795
Target:  5'- uAUGAUCgGUGCCaAGCG-UAcUGGCGc -3'
miRNA:   3'- -UACUAGgCACGG-UUGCuGUuACCGUa -5'
10388 3' -52.5 NC_002687.1 + 76609 0.66 0.996251
Target:  5'- ----gCCGUGCCucgugcuaGACGGUGGCGg -3'
miRNA:   3'- uacuaGGCACGGuug-----CUGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 296859 0.66 0.996192
Target:  5'- -cGAUCgCGUGCacuaccuaaaaauCAACGGCGuugGGCAUg -3'
miRNA:   3'- uaCUAG-GCACG-------------GUUGCUGUua-CCGUA- -5'
10388 3' -52.5 NC_002687.1 + 182916 0.66 0.995633
Target:  5'- -cGcUCCGgcaugGCCGugGgACGGUGGCGa -3'
miRNA:   3'- uaCuAGGCa----CGGUugC-UGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 316285 0.66 0.995633
Target:  5'- -gGAUCCG-GUCAugAUGGCGGUGGUg- -3'
miRNA:   3'- uaCUAGGCaCGGU--UGCUGUUACCGua -5'
10388 3' -52.5 NC_002687.1 + 170724 0.66 0.99486
Target:  5'- -cGGUUCGUGCCccgguucGugGGCcgGGUGGCAg -3'
miRNA:   3'- uaCUAGGCACGG-------UugCUG--UUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 2794 0.67 0.993266
Target:  5'- --cAUCCGUGUCuAUGACAccGGCGUc -3'
miRNA:   3'- uacUAGGCACGGuUGCUGUuaCCGUA- -5'
10388 3' -52.5 NC_002687.1 + 92877 0.67 0.992281
Target:  5'- -gGAUCCGUGUCAgucaGCGugGAUGuaGa -3'
miRNA:   3'- uaCUAGGCACGGU----UGCugUUACcgUa -5'
10388 3' -52.5 NC_002687.1 + 200110 0.67 0.989968
Target:  5'- --cGUUgGUGCCGGCGACGAcGGCc- -3'
miRNA:   3'- uacUAGgCACGGUUGCUGUUaCCGua -5'
10388 3' -52.5 NC_002687.1 + 255661 0.67 0.989968
Target:  5'- --aGUCCGUGUggUGAUGACGGUGGUAg -3'
miRNA:   3'- uacUAGGCACG--GUUGCUGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 174887 0.68 0.987146
Target:  5'- -cGAUCCaUGCaCAAgUGACAAUGGUAg -3'
miRNA:   3'- uaCUAGGcACG-GUU-GCUGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 262956 0.68 0.983749
Target:  5'- -cGAUCCGcGUCGACaaGAUggUGGCGa -3'
miRNA:   3'- uaCUAGGCaCGGUUG--CUGuuACCGUa -5'
10388 3' -52.5 NC_002687.1 + 21692 0.69 0.977432
Target:  5'- -aGcgCaugGCCGAUGACAGUGGCGUu -3'
miRNA:   3'- uaCuaGgcaCGGUUGCUGUUACCGUA- -5'
10388 3' -52.5 NC_002687.1 + 224219 0.69 0.974971
Target:  5'- gGUGG-CgGUGgCGAUGGCGAUGGCGa -3'
miRNA:   3'- -UACUaGgCACgGUUGCUGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 224404 0.69 0.96947
Target:  5'- -cGAUgCCGaUGCCGauacugAUGGCGAUGGCAg -3'
miRNA:   3'- uaCUA-GGC-ACGGU------UGCUGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 236598 0.69 0.966419
Target:  5'- cGUGAUCacaucaagcaGUGCCAACuugcACAGUGGCGc -3'
miRNA:   3'- -UACUAGg---------CACGGUUGc---UGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 225724 0.7 0.963158
Target:  5'- -gGGUUgGUGCCGAUGACAacggggAUGGUAg -3'
miRNA:   3'- uaCUAGgCACGGUUGCUGU------UACCGUa -5'
10388 3' -52.5 NC_002687.1 + 226282 0.7 0.963158
Target:  5'- -gGGUUgGUGCCGAUGACAacggggAUGGUAg -3'
miRNA:   3'- uaCUAGgCACGGUUGCUGU------UACCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.