miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10409 3' -59.3 NC_002687.1 + 223907 0.66 0.924539
Target:  5'- cCCgaacUGCUGCUGUUgCUGUcGCUGCc -3'
miRNA:   3'- -GGacc-ACGACGGCGGgGACAaCGACG- -5'
10409 3' -59.3 NC_002687.1 + 167030 0.66 0.924539
Target:  5'- uCCUGGUGCUGgUGUCUCccgUGCUc- -3'
miRNA:   3'- -GGACCACGACgGCGGGGacaACGAcg -5'
10409 3' -59.3 NC_002687.1 + 153513 0.66 0.918838
Target:  5'- cCUUGGUuugccuuacaguuGcCUGCCuuaCCCCUGUUGUggggGCa -3'
miRNA:   3'- -GGACCA-------------C-GACGGc--GGGGACAACGa---CG- -5'
10409 3' -59.3 NC_002687.1 + 292887 0.66 0.908399
Target:  5'- aCUGGUcaGCaGaagacuaCGCUCCUGcUGCUGCc -3'
miRNA:   3'- gGACCA--CGaCg------GCGGGGACaACGACG- -5'
10409 3' -59.3 NC_002687.1 + 317357 0.66 0.908399
Target:  5'- -aUGuUGUUGuuGUUgCUGUUGCUGCu -3'
miRNA:   3'- ggACcACGACggCGGgGACAACGACG- -5'
10409 3' -59.3 NC_002687.1 + 266766 0.66 0.908399
Target:  5'- aCCUgGGUGaUGCCccgGCCUCUGUUGUg-- -3'
miRNA:   3'- -GGA-CCACgACGG---CGGGGACAACGacg -5'
10409 3' -59.3 NC_002687.1 + 134162 0.66 0.902607
Target:  5'- aCCUGGUGCUaaGcCCGCCCac---GCUuGCc -3'
miRNA:   3'- -GGACCACGA--C-GGCGGGgacaaCGA-CG- -5'
10409 3' -59.3 NC_002687.1 + 172187 0.66 0.902607
Target:  5'- uCCUGGaGUgGCCGCUUCUGcguCUGCg -3'
miRNA:   3'- -GGACCaCGaCGGCGGGGACaacGACG- -5'
10409 3' -59.3 NC_002687.1 + 85613 0.67 0.890413
Target:  5'- gCCUGGUcCaGCCGgCCCUcUUGgUGCc -3'
miRNA:   3'- -GGACCAcGaCGGCgGGGAcAACgACG- -5'
10409 3' -59.3 NC_002687.1 + 253799 0.67 0.890413
Target:  5'- uCCUGGcGCUgGCCcgaaCCCUGUUGg-GCg -3'
miRNA:   3'- -GGACCaCGA-CGGcg--GGGACAACgaCG- -5'
10409 3' -59.3 NC_002687.1 + 293318 0.67 0.890413
Target:  5'- gCCggaagGG-GCUGUCGCCuCCcGcUGUUGCa -3'
miRNA:   3'- -GGa----CCaCGACGGCGG-GGaCaACGACG- -5'
10409 3' -59.3 NC_002687.1 + 145668 0.67 0.884018
Target:  5'- --aGGUcaGCUuCCgGCCCCUGgcggacUGCUGCg -3'
miRNA:   3'- ggaCCA--CGAcGG-CGGGGACa-----ACGACG- -5'
10409 3' -59.3 NC_002687.1 + 279318 0.67 0.870646
Target:  5'- gCUGG-GuCUGCCccCCCCUGc-GCUGCc -3'
miRNA:   3'- gGACCaC-GACGGc-GGGGACaaCGACG- -5'
10409 3' -59.3 NC_002687.1 + 304156 0.67 0.863678
Target:  5'- -gUGGUGCUGCCGgcgaCCaaaauggUGggGCUGUg -3'
miRNA:   3'- ggACCACGACGGCg---GGg------ACaaCGACG- -5'
10409 3' -59.3 NC_002687.1 + 87772 0.68 0.849201
Target:  5'- aUCUGGUagccggGCUGCUgacucgGCCUCUGguagacggGCUGCu -3'
miRNA:   3'- -GGACCA------CGACGG------CGGGGACaa------CGACG- -5'
10409 3' -59.3 NC_002687.1 + 284667 0.68 0.841702
Target:  5'- -gUGGaagGC-GCaGCCCCUGgUGCUGCc -3'
miRNA:   3'- ggACCa--CGaCGgCGGGGACaACGACG- -5'
10409 3' -59.3 NC_002687.1 + 298670 0.68 0.834036
Target:  5'- gCCUGGUGUgccccGgCGCCUCUucugcauaUGCUGCa -3'
miRNA:   3'- -GGACCACGa----CgGCGGGGAca------ACGACG- -5'
10409 3' -59.3 NC_002687.1 + 62054 0.69 0.784906
Target:  5'- aCCUGGaUGUUGCCGUCCgac-UGCUGa -3'
miRNA:   3'- -GGACC-ACGACGGCGGGgacaACGACg -5'
10409 3' -59.3 NC_002687.1 + 20908 0.69 0.784906
Target:  5'- aUCUGGguggugUGCUGgaCGCUCCuuuuggaucUGUUGCUGCu -3'
miRNA:   3'- -GGACC------ACGACg-GCGGGG---------ACAACGACG- -5'
10409 3' -59.3 NC_002687.1 + 293899 0.69 0.767496
Target:  5'- --gGGcUGCUGCUGUCgCUGcUGCUGUa -3'
miRNA:   3'- ggaCC-ACGACGGCGGgGACaACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.