Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10409 | 3' | -59.3 | NC_002687.1 | + | 87772 | 0.68 | 0.849201 |
Target: 5'- aUCUGGUagccggGCUGCUgacucgGCCUCUGguagacggGCUGCu -3' miRNA: 3'- -GGACCA------CGACGG------CGGGGACaa------CGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 304156 | 0.67 | 0.863678 |
Target: 5'- -gUGGUGCUGCCGgcgaCCaaaauggUGggGCUGUg -3' miRNA: 3'- ggACCACGACGGCg---GGg------ACaaCGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 279318 | 0.67 | 0.870646 |
Target: 5'- gCUGG-GuCUGCCccCCCCUGc-GCUGCc -3' miRNA: 3'- gGACCaC-GACGGc-GGGGACaaCGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 145668 | 0.67 | 0.884018 |
Target: 5'- --aGGUcaGCUuCCgGCCCCUGgcggacUGCUGCg -3' miRNA: 3'- ggaCCA--CGAcGG-CGGGGACa-----ACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 85613 | 0.67 | 0.890413 |
Target: 5'- gCCUGGUcCaGCCGgCCCUcUUGgUGCc -3' miRNA: 3'- -GGACCAcGaCGGCgGGGAcAACgACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 253799 | 0.67 | 0.890413 |
Target: 5'- uCCUGGcGCUgGCCcgaaCCCUGUUGg-GCg -3' miRNA: 3'- -GGACCaCGA-CGGcg--GGGACAACgaCG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 293318 | 0.67 | 0.890413 |
Target: 5'- gCCggaagGG-GCUGUCGCCuCCcGcUGUUGCa -3' miRNA: 3'- -GGa----CCaCGACGGCGG-GGaCaACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 172187 | 0.66 | 0.902607 |
Target: 5'- uCCUGGaGUgGCCGCUUCUGcguCUGCg -3' miRNA: 3'- -GGACCaCGaCGGCGGGGACaacGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 134162 | 0.66 | 0.902607 |
Target: 5'- aCCUGGUGCUaaGcCCGCCCac---GCUuGCc -3' miRNA: 3'- -GGACCACGA--C-GGCGGGgacaaCGA-CG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 317357 | 0.66 | 0.908399 |
Target: 5'- -aUGuUGUUGuuGUUgCUGUUGCUGCu -3' miRNA: 3'- ggACcACGACggCGGgGACAACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 292887 | 0.66 | 0.908399 |
Target: 5'- aCUGGUcaGCaGaagacuaCGCUCCUGcUGCUGCc -3' miRNA: 3'- gGACCA--CGaCg------GCGGGGACaACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 266766 | 0.66 | 0.908399 |
Target: 5'- aCCUgGGUGaUGCCccgGCCUCUGUUGUg-- -3' miRNA: 3'- -GGA-CCACgACGG---CGGGGACAACGacg -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 153513 | 0.66 | 0.918838 |
Target: 5'- cCUUGGUuugccuuacaguuGcCUGCCuuaCCCCUGUUGUggggGCa -3' miRNA: 3'- -GGACCA-------------C-GACGGc--GGGGACAACGa---CG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 167030 | 0.66 | 0.924539 |
Target: 5'- uCCUGGUGCUGgUGUCUCccgUGCUc- -3' miRNA: 3'- -GGACCACGACgGCGGGGacaACGAcg -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 223907 | 0.66 | 0.924539 |
Target: 5'- cCCgaacUGCUGCUGUUgCUGUcGCUGCc -3' miRNA: 3'- -GGacc-ACGACGGCGGgGACAaCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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