miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 69043 0.82 0.200083
Target:  5'- gAUGGUGGCGGCGGUGGCGGUGGUgucGGCg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 226743 0.82 0.204917
Target:  5'- cGCAGgguucucucGGCAGCGGCGGUGGUGGUAGCg -3'
miRNA:   3'- -UGUCa--------UCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224168 0.82 0.209853
Target:  5'- gGCGGUGGCGGUGGCGGgGGCAGU-GCu -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCgUCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 102460 0.81 0.22003
Target:  5'- gACAGgcGCAGCAGCGGCAGauGCAGa -3'
miRNA:   3'- -UGUCauCGUCGUCGCCGUCguCGUCg -5'
10410 3' -57.6 NC_002687.1 + 283895 0.81 0.222116
Target:  5'- ----cAGCAGCAGCGGCuggggcuugugagccAGCAGCGGCg -3'
miRNA:   3'- ugucaUCGUCGUCGCCG---------------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 209900 0.8 0.265011
Target:  5'- gGCAGUGGUgcccguaguGGCAGUGGUGGCAGUGGUg -3'
miRNA:   3'- -UGUCAUCG---------UCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 72556 0.8 0.277363
Target:  5'- gGCGGUGuGuCGGCGGCGGCGGCGuCGGCa -3'
miRNA:   3'- -UGUCAU-C-GUCGUCGCCGUCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 281929 0.8 0.283709
Target:  5'- -gAGUGGCAGCAucggucGCGGCAGgAGCAGg -3'
miRNA:   3'- ugUCAUCGUCGU------CGCCGUCgUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 240991 0.79 0.296744
Target:  5'- cGCAGUgaAGcCAGCAGCGGCuGUGGCAGa -3'
miRNA:   3'- -UGUCA--UC-GUCGUCGCCGuCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 153276 0.79 0.303435
Target:  5'- gACGGaAGCAGggacuuccaCAGCaGCAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUC---------GUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 247570 0.78 0.324199
Target:  5'- gGCAGUAGaAGCAGgGGaagcaGGCAGCAGUa -3'
miRNA:   3'- -UGUCAUCgUCGUCgCCg----UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208209 0.78 0.346002
Target:  5'- aGCAGcgacAGCAGCAGCGacgauggaAGCAGCAGCg -3'
miRNA:   3'- -UGUCa---UCGUCGUCGCcg------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208560 0.78 0.361112
Target:  5'- gAUGGaAGCAGCAGCGacgauGgAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUCGUCGC-----CgUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 18650 0.77 0.368837
Target:  5'- aGCAGgGGCAGgAGgGGCaagaGGCGGCGGCg -3'
miRNA:   3'- -UGUCaUCGUCgUCgCCG----UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 316193 0.77 0.368837
Target:  5'- gGCGGgaucuucGGguGCGGCGGCGGCAcccggcGCGGCg -3'
miRNA:   3'- -UGUCa------UCguCGUCGCCGUCGU------CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 10435 0.77 0.368837
Target:  5'- gUAGaAGCAGUAGCGGUAGCAuCGGCc -3'
miRNA:   3'- uGUCaUCGUCGUCGCCGUCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 10069 0.77 0.376675
Target:  5'- nCAGUAGUAGCAGgGGguGUAGCAc- -3'
miRNA:   3'- uGUCAUCGUCGUCgCCguCGUCGUcg -5'
10410 3' -57.6 NC_002687.1 + 210022 0.77 0.400852
Target:  5'- -uGGUGGCAGUcGUGGCAGUgguGCAGCu -3'
miRNA:   3'- ugUCAUCGUCGuCGCCGUCGu--CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 223553 0.76 0.41751
Target:  5'- aGCAacAGCAGCAGUucgGGCAGCucgGGCAGCg -3'
miRNA:   3'- -UGUcaUCGUCGUCG---CCGUCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 225480 0.76 0.425996
Target:  5'- gACGGacgaAGCuuacGCGGCGGCGGCGGCGGa -3'
miRNA:   3'- -UGUCa---UCGu---CGUCGCCGUCGUCGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.