miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 332278 0.68 0.858497
Target:  5'- aACAGcGGCucacaccauuGCGGCGGCGGC-GCuugGGCg -3'
miRNA:   3'- -UGUCaUCGu---------CGUCGCCGUCGuCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 330562 0.68 0.85099
Target:  5'- -gAGUGGUGGUGGCGuGCAcauGCcGGCAGCc -3'
miRNA:   3'- ugUCAUCGUCGUCGC-CGU---CG-UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 329824 0.67 0.893086
Target:  5'- cGCAGUGGCAGCgaucuuacaucAGCGGCAuCuu-GGCg -3'
miRNA:   3'- -UGUCAUCGUCG-----------UCGCCGUcGucgUCG- -5'
10410 3' -57.6 NC_002687.1 + 328761 0.66 0.941887
Target:  5'- uCGGUGGCcaagAGCAuCGGCgaAGCAGCuGGUg -3'
miRNA:   3'- uGUCAUCG----UCGUcGCCG--UCGUCG-UCG- -5'
10410 3' -57.6 NC_002687.1 + 328274 0.68 0.872233
Target:  5'- gACGGUGGCAgGCAGCGuuGGUGGacaacguCGGCg -3'
miRNA:   3'- -UGUCAUCGU-CGUCGCcgUCGUC-------GUCG- -5'
10410 3' -57.6 NC_002687.1 + 327576 0.7 0.748506
Target:  5'- cGCGGaAGCAGaUGGCGacGCAGUAGguGCa -3'
miRNA:   3'- -UGUCaUCGUC-GUCGC--CGUCGUCguCG- -5'
10410 3' -57.6 NC_002687.1 + 323327 0.72 0.681551
Target:  5'- ----cGGCAaCAGCaGCAGCAGCAGUa -3'
miRNA:   3'- ugucaUCGUcGUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 318629 0.68 0.879859
Target:  5'- uGCAaaGGCGGUGGCGGCguaAGC-GUAGCu -3'
miRNA:   3'- -UGUcaUCGUCGUCGCCG---UCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 316193 0.77 0.368837
Target:  5'- gGCGGgaucuucGGguGCGGCGGCGGCAcccggcGCGGCg -3'
miRNA:   3'- -UGUCa------UCguCGUCGCCGUCGU------CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 316067 0.71 0.729726
Target:  5'- --cGUGGCGGCAggauucgguGCGGCuGGCGGUGGUg -3'
miRNA:   3'- uguCAUCGUCGU---------CGCCG-UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 312224 0.75 0.4881
Target:  5'- aACGGaAGCgAGCGGCGG-AGCAGCGGg -3'
miRNA:   3'- -UGUCaUCG-UCGUCGCCgUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 310849 0.69 0.810822
Target:  5'- cGCAGaauuUGGCAGCGaaugguccGgGGCGcguGCGGCGGCg -3'
miRNA:   3'- -UGUC----AUCGUCGU--------CgCCGU---CGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 309986 0.69 0.802309
Target:  5'- -gGGUGGgGGCAGCuuacGCAGaagaAGCAGCc -3'
miRNA:   3'- ugUCAUCgUCGUCGc---CGUCg---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 309188 0.73 0.612724
Target:  5'- cCGGUGGCAucgauGCuGCGGCGGagacuGGCGGCg -3'
miRNA:   3'- uGUCAUCGU-----CGuCGCCGUCg----UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 308868 0.71 0.729726
Target:  5'- uCGGUGGUGGgGGCGuCAGCGGgGGCu -3'
miRNA:   3'- uGUCAUCGUCgUCGCcGUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 307803 0.73 0.612724
Target:  5'- gGCGGUGaCGGCGGUgacGGCAGCgauggugaugagGGCAGCg -3'
miRNA:   3'- -UGUCAUcGUCGUCG---CCGUCG------------UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 307642 0.84 0.149447
Target:  5'- gGCGGUGGCGGUGGUGGUgcuggcacgGGCGGCGGCg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCG---------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 303877 0.73 0.583286
Target:  5'- aACcGUAGCuGCAGCaGCAGUAGC-GCu -3'
miRNA:   3'- -UGuCAUCGuCGUCGcCGUCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 300600 0.69 0.819185
Target:  5'- -aAGUGGCGGaAGuCGGCGGUggaAGCGGUa -3'
miRNA:   3'- ugUCAUCGUCgUC-GCCGUCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 298890 0.66 0.927605
Target:  5'- uCGGUGGCuGUGGCuGUGGUGGUGGCu -3'
miRNA:   3'- uGUCAUCGuCGUCGcCGUCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.