Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 11414 | 1.07 | 0.004829 |
Target: 5'- aGCGGUGGCAGCAGCGGCAGCAGCAGUa -3' miRNA: 3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 69043 | 0.82 | 0.200083 |
Target: 5'- gAUGGUGGCGGCGGUGGCGGUGGUgucGGCg -3' miRNA: 3'- -UGUCAUCGUCGUCGCCGUCGUCG---UCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 224168 | 0.82 | 0.209853 |
Target: 5'- gGCGGUGGCGGUGGCGGgGGCAGU-GCu -3' miRNA: 3'- -UGUCAUCGUCGUCGCCgUCGUCGuCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 328761 | 0.66 | 0.941887 |
Target: 5'- uCGGUGGCcaagAGCAuCGGCgaAGCAGCuGGUg -3' miRNA: 3'- uGUCAUCG----UCGUcGCCG--UCGUCG-UCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 11381 | 0.95 | 0.031917 |
Target: 5'- cGCGGUAGCAGUAgccGCGGUAGCAGCAGCg -3' miRNA: 3'- -UGUCAUCGUCGU---CGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 11321 | 0.93 | 0.040442 |
Target: 5'- aGCAGcAGCAGUAGCGGCGGCAGCAGg -3' miRNA: 3'- -UGUCaUCGUCGUCGCCGUCGUCGUCg -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 224198 | 0.91 | 0.056805 |
Target: 5'- gGCGGUGGCGGUGGCGGUGGCGGUGGCg -3' miRNA: 3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 12174 | 0.89 | 0.069898 |
Target: 5'- gGCAGaaggAGCAGCAGCGGCAGCGGaAGCg -3' miRNA: 3'- -UGUCa---UCGUCGUCGCCGUCGUCgUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 226812 | 0.87 | 0.095106 |
Target: 5'- cCGGUGGCGGUGGCGGUGGCGGUGGCg -3' miRNA: 3'- uGUCAUCGUCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 282158 | 0.82 | 0.195348 |
Target: 5'- uGCGGcGGCAGCGGCGggaguagggccuGCGGCGGCGGCu -3' miRNA: 3'- -UGUCaUCGUCGUCGC------------CGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 280956 | 0.84 | 0.153177 |
Target: 5'- gGCGGgGGCcugGGUGGCGGCAGCGGCGGCc -3' miRNA: 3'- -UGUCaUCG---UCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 282062 | 0.88 | 0.085869 |
Target: 5'- gGCAGgGGCcGUAGUGGCAGCAGCGGCg -3' miRNA: 3'- -UGUCaUCGuCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 208182 | 1.01 | 0.011965 |
Target: 5'- aACGGUAGCAGCAGCaGCAGCAGCAGCa -3' miRNA: 3'- -UGUCAUCGUCGUCGcCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 11441 | 0.83 | 0.168955 |
Target: 5'- aGCAGUAGCGGguGUaguagcaaccguGGUAGCAGCAGUa -3' miRNA: 3'- -UGUCAUCGUCguCG------------CCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 224449 | 0.96 | 0.024508 |
Target: 5'- -uGGUGGUGGCGGCGGCAGCGGCAGCg -3' miRNA: 3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 11501 | 0.88 | 0.083697 |
Target: 5'- aGCGGUcGUAGCAGCGGCGGCuauAGCAGCu -3' miRNA: 3'- -UGUCAuCGUCGUCGCCGUCG---UCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 224114 | 0.82 | 0.195348 |
Target: 5'- cGCGGUGGCGGUggcgcuggcgcuGGCGGUGGCGGUGGCg -3' miRNA: 3'- -UGUCAUCGUCG------------UCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 226743 | 0.82 | 0.204917 |
Target: 5'- cGCAGgguucucucGGCAGCGGCGGUGGUGGUAGCg -3' miRNA: 3'- -UGUCa--------UCGUCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 10310 | 0.96 | 0.025166 |
Target: 5'- -aGGUAGCAGCAGUGGCGGCGGCAGUg -3' miRNA: 3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 10046 | 0.92 | 0.048578 |
Target: 5'- -uGGUGGCAGCAGCaGCAGCAGUAGCa -3' miRNA: 3'- ugUCAUCGUCGUCGcCGUCGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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