miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 5' -59.9 NC_002687.1 + 291681 1.07 0.003862
Target:  5'- gCAGCAGCUACGACAGCCUCGCGGCCGc -3'
miRNA:   3'- -GUCGUCGAUGCUGUCGGAGCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 224463 0.89 0.063032
Target:  5'- gCAGCGGCaGCGGCAGCUUCGUGGCCa -3'
miRNA:   3'- -GUCGUCGaUGCUGUCGGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 114100 0.77 0.349548
Target:  5'- gCAGCAaagcgucGCUGCGGCAGCgguaaUCGCGGUCGc -3'
miRNA:   3'- -GUCGU-------CGAUGCUGUCGg----AGCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 293540 0.74 0.470545
Target:  5'- aCAGCAGCaGCGACAGCagcagcccccuCUCGCGGaauacaCGa -3'
miRNA:   3'- -GUCGUCGaUGCUGUCG-----------GAGCGCCg-----GC- -5'
10410 5' -59.9 NC_002687.1 + 103390 0.74 0.479305
Target:  5'- uGGCGGcCUugGcuGCAGCCuUCGUGGCCu -3'
miRNA:   3'- gUCGUC-GAugC--UGUCGG-AGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 60651 0.73 0.515103
Target:  5'- aAGCAGUUcgGCaGACAGCCuUCGCuGGCCu -3'
miRNA:   3'- gUCGUCGA--UG-CUGUCGG-AGCG-CCGGc -5'
10410 5' -59.9 NC_002687.1 + 283184 0.73 0.524225
Target:  5'- gCGGCAGCaacagggGCGGCAGCaccaggCGCGGCgGg -3'
miRNA:   3'- -GUCGUCGa------UGCUGUCGga----GCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 280946 0.72 0.570659
Target:  5'- aAGCAGCgucgGCGGgGGCCUggguggcggcagCgGCGGCCGg -3'
miRNA:   3'- gUCGUCGa---UGCUgUCGGA------------G-CGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 328807 0.72 0.580077
Target:  5'- aCGGCuGCUugGugGGCUUCGaGGUCGu -3'
miRNA:   3'- -GUCGuCGAugCugUCGGAGCgCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 295255 0.72 0.589529
Target:  5'- uGGC-GCUACGAgGgugcGCCUCGCGGCg- -3'
miRNA:   3'- gUCGuCGAUGCUgU----CGGAGCGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 277757 0.71 0.618022
Target:  5'- uCAGCAGCU-CGGCAGCaguagcagCGCGGgCa -3'
miRNA:   3'- -GUCGUCGAuGCUGUCGga------GCGCCgGc -5'
10410 5' -59.9 NC_002687.1 + 310934 0.71 0.637073
Target:  5'- aCGGCGGUUGCGGCGcGCCaCGCacggcgaaauGGCCGc -3'
miRNA:   3'- -GUCGUCGAUGCUGU-CGGaGCG----------CCGGC- -5'
10410 5' -59.9 NC_002687.1 + 237111 0.71 0.656111
Target:  5'- gCAGCGGCUG-GGCAGgCUCacGCGGCUu -3'
miRNA:   3'- -GUCGUCGAUgCUGUCgGAG--CGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 303895 0.71 0.656111
Target:  5'- uGGUGGCUGCacuccgGACAGCCuUCGCgaaGGCCa -3'
miRNA:   3'- gUCGUCGAUG------CUGUCGG-AGCG---CCGGc -5'
10410 5' -59.9 NC_002687.1 + 39415 0.71 0.656111
Target:  5'- uCAGCAGCUcgcggGCGACaugagcguGGCCuUCGCgGGCUGc -3'
miRNA:   3'- -GUCGUCGA-----UGCUG--------UCGG-AGCG-CCGGC- -5'
10410 5' -59.9 NC_002687.1 + 10315 0.71 0.665608
Target:  5'- gCAGCAGUgGCGGCGGCagUgGCGGCgGc -3'
miRNA:   3'- -GUCGUCGaUGCUGUCGg-AgCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 328105 0.71 0.665608
Target:  5'- aAGCGGCgACGACGGCUUCGCcauggaauuGCUGg -3'
miRNA:   3'- gUCGUCGaUGCUGUCGGAGCGc--------CGGC- -5'
10410 5' -59.9 NC_002687.1 + 298420 0.7 0.703292
Target:  5'- aAGCAcGCgcgcgGCGGCGGCC--GCGGCCu -3'
miRNA:   3'- gUCGU-CGa----UGCUGUCGGagCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 316183 0.7 0.703292
Target:  5'- uCGGguGCgGCGGCGGCacccggCGCGGCgGa -3'
miRNA:   3'- -GUCguCGaUGCUGUCGga----GCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 311745 0.7 0.712601
Target:  5'- gCGGCAGCUGCuGugAcGCacaCGCGGCUGu -3'
miRNA:   3'- -GUCGUCGAUG-CugU-CGga-GCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.