miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 5' -59.9 NC_002687.1 + 10315 0.71 0.665608
Target:  5'- gCAGCAGUgGCGGCGGCagUgGCGGCgGc -3'
miRNA:   3'- -GUCGUCGaUGCUGUCGg-AgCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 10439 0.68 0.792821
Target:  5'- aAGCAGUaGCGGuagcauCGGCCUCG-GGCCc -3'
miRNA:   3'- gUCGUCGaUGCU------GUCGGAGCgCCGGc -5'
10410 5' -59.9 NC_002687.1 + 11523 0.66 0.90767
Target:  5'- aUAGCAGCUGCGACAcGa---GCGGUa- -3'
miRNA:   3'- -GUCGUCGAUGCUGU-CggagCGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 12182 0.68 0.817564
Target:  5'- gAGCAGCaGCGGCAGCggaaGCGGUa- -3'
miRNA:   3'- gUCGUCGaUGCUGUCGgag-CGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 17849 0.68 0.823155
Target:  5'- aAGCGGC-AUGAUgaaugucagugccaAGCgUUGCGGCCGc -3'
miRNA:   3'- gUCGUCGaUGCUG--------------UCGgAGCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 18336 0.68 0.801204
Target:  5'- gGGCGGUgAUGACAGUgaCGCcguGGCCGa -3'
miRNA:   3'- gUCGUCGaUGCUGUCGgaGCG---CCGGC- -5'
10410 5' -59.9 NC_002687.1 + 18581 0.66 0.895871
Target:  5'- -cGguGCUGCGACGGUgUCGUccuGCUGu -3'
miRNA:   3'- guCguCGAUGCUGUCGgAGCGc--CGGC- -5'
10410 5' -59.9 NC_002687.1 + 25431 0.68 0.809454
Target:  5'- gAGUAccGCUACGACGGCgUacacuccgcggaUGUGGCCGu -3'
miRNA:   3'- gUCGU--CGAUGCUGUCGgA------------GCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 39415 0.71 0.656111
Target:  5'- uCAGCAGCUcgcggGCGACaugagcguGGCCuUCGCgGGCUGc -3'
miRNA:   3'- -GUCGUCGA-----UGCUG--------UCGG-AGCG-CCGGC- -5'
10410 5' -59.9 NC_002687.1 + 41332 0.67 0.862945
Target:  5'- uCAGCAGCU-CGACGcuuucGCCagaGCGGCg- -3'
miRNA:   3'- -GUCGUCGAuGCUGU-----CGGag-CGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 60651 0.73 0.515103
Target:  5'- aAGCAGUUcgGCaGACAGCCuUCGCuGGCCu -3'
miRNA:   3'- gUCGUCGA--UG-CUGUCGG-AGCG-CCGGc -5'
10410 5' -59.9 NC_002687.1 + 63705 0.69 0.76695
Target:  5'- aCGGCAGC-ACGGCucuccacGUUUCGCGGUCu -3'
miRNA:   3'- -GUCGUCGaUGCUGu------CGGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 98027 0.66 0.895871
Target:  5'- uCGGCAGCcguCGAggcccuaGGCUUCGgGGCCc -3'
miRNA:   3'- -GUCGUCGau-GCUg------UCGGAGCgCCGGc -5'
10410 5' -59.9 NC_002687.1 + 103390 0.74 0.479305
Target:  5'- uGGCGGcCUugGcuGCAGCCuUCGUGGCCu -3'
miRNA:   3'- gUCGUC-GAugC--UGUCGG-AGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 114100 0.77 0.349548
Target:  5'- gCAGCAaagcgucGCUGCGGCAGCgguaaUCGCGGUCGc -3'
miRNA:   3'- -GUCGU-------CGAUGCUGUCGg----AGCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 153254 0.69 0.76695
Target:  5'- gCAGCAGCaGCaGCGGCCUCGUccuGGUa- -3'
miRNA:   3'- -GUCGUCGaUGcUGUCGGAGCG---CCGgc -5'
10410 5' -59.9 NC_002687.1 + 154316 0.68 0.79113
Target:  5'- uCGGCgAGCUGCGcaacugcgaccaaGCGGUCgccaaguUCGUGGCCGa -3'
miRNA:   3'- -GUCG-UCGAUGC-------------UGUCGG-------AGCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 158805 0.7 0.712601
Target:  5'- aCGGCGGCgacaACGACGgaccGCCgUCGCcGCCGg -3'
miRNA:   3'- -GUCGUCGa---UGCUGU----CGG-AGCGcCGGC- -5'
10410 5' -59.9 NC_002687.1 + 159175 0.69 0.740143
Target:  5'- cCGGCGGCgACGGCGGUCcgucguugUCGCcGCCGu -3'
miRNA:   3'- -GUCGUCGaUGCUGUCGG--------AGCGcCGGC- -5'
10410 5' -59.9 NC_002687.1 + 159226 0.68 0.801204
Target:  5'- uGGUAGCUuucACGuuGGCCUUGUcgacGGCCGc -3'
miRNA:   3'- gUCGUCGA---UGCugUCGGAGCG----CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.