miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 5' -59.9 NC_002687.1 + 224463 0.89 0.063032
Target:  5'- gCAGCGGCaGCGGCAGCUUCGUGGCCa -3'
miRNA:   3'- -GUCGUCGaUGCUGUCGGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 282159 0.68 0.817564
Target:  5'- gCGGCGGCaGCGGCgggaguagGGCCU-GCGGCgGc -3'
miRNA:   3'- -GUCGUCGaUGCUG--------UCGGAgCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 17849 0.68 0.823155
Target:  5'- aAGCGGC-AUGAUgaaugucagugccaAGCgUUGCGGCCGc -3'
miRNA:   3'- gUCGUCGaUGCUG--------------UCGgAGCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 11523 0.66 0.90767
Target:  5'- aUAGCAGCUGCGACAcGa---GCGGUa- -3'
miRNA:   3'- -GUCGUCGAUGCUGU-CggagCGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 310934 0.71 0.637073
Target:  5'- aCGGCGGUUGCGGCGcGCCaCGCacggcgaaauGGCCGc -3'
miRNA:   3'- -GUCGUCGAUGCUGU-CGGaGCG----------CCGGC- -5'
10410 5' -59.9 NC_002687.1 + 10315 0.71 0.665608
Target:  5'- gCAGCAGUgGCGGCGGCagUgGCGGCgGc -3'
miRNA:   3'- -GUCGUCGaUGCUGUCGg-AgCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 311745 0.7 0.712601
Target:  5'- gCGGCAGCUGCuGugAcGCacaCGCGGCUGu -3'
miRNA:   3'- -GUCGUCGAUG-CugU-CGga-GCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 158805 0.7 0.712601
Target:  5'- aCGGCGGCgacaACGACGgaccGCCgUCGCcGCCGg -3'
miRNA:   3'- -GUCGUCGa---UGCUGU----CGG-AGCGcCGGC- -5'
10410 5' -59.9 NC_002687.1 + 10439 0.68 0.792821
Target:  5'- aAGCAGUaGCGGuagcauCGGCCUCG-GGCCc -3'
miRNA:   3'- gUCGUCGaUGCU------GUCGGAGCgCCGGc -5'
10410 5' -59.9 NC_002687.1 + 12182 0.68 0.817564
Target:  5'- gAGCAGCaGCGGCAGCggaaGCGGUa- -3'
miRNA:   3'- gUCGUCGaUGCUGUCGgag-CGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 283894 0.68 0.801204
Target:  5'- gCAGCAGCaGCGGCugGGgCUUGUGaGCCa -3'
miRNA:   3'- -GUCGUCGaUGCUG--UCgGAGCGC-CGGc -5'
10410 5' -59.9 NC_002687.1 + 63705 0.69 0.76695
Target:  5'- aCGGCAGC-ACGGCucuccacGUUUCGCGGUCu -3'
miRNA:   3'- -GUCGUCGaUGCUGu------CGGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 293540 0.74 0.470545
Target:  5'- aCAGCAGCaGCGACAGCagcagcccccuCUCGCGGaauacaCGa -3'
miRNA:   3'- -GUCGUCGaUGCUGUCG-----------GAGCGCCg-----GC- -5'
10410 5' -59.9 NC_002687.1 + 284391 0.68 0.801204
Target:  5'- uCAGCAGgUGCaucGACAGCUUCcggaGCGGCa- -3'
miRNA:   3'- -GUCGUCgAUG---CUGUCGGAG----CGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 283184 0.73 0.524225
Target:  5'- gCGGCAGCaacagggGCGGCAGCaccaggCGCGGCgGg -3'
miRNA:   3'- -GUCGUCGa------UGCUGUCGga----GCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 178667 0.69 0.74917
Target:  5'- aCGGUAaCUACGACuuuuucGuCCUCGUGGCCa -3'
miRNA:   3'- -GUCGUcGAUGCUGu-----C-GGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 25431 0.68 0.809454
Target:  5'- gAGUAccGCUACGACGGCgUacacuccgcggaUGUGGCCGu -3'
miRNA:   3'- gUCGU--CGAUGCUGUCGgA------------GCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 275294 0.68 0.820767
Target:  5'- -cGCuGCUuagAgGACGGCgcgacguccauguauCUCGCGGCCGa -3'
miRNA:   3'- guCGuCGA---UgCUGUCG---------------GAGCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 280946 0.72 0.570659
Target:  5'- aAGCAGCgucgGCGGgGGCCUggguggcggcagCgGCGGCCGg -3'
miRNA:   3'- gUCGUCGa---UGCUgUCGGA------------G-CGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 328105 0.71 0.665608
Target:  5'- aAGCGGCgACGACGGCUUCGCcauggaauuGCUGg -3'
miRNA:   3'- gUCGUCGaUGCUGUCGGAGCGc--------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.