miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10425 3' -58.5 NC_002687.1 + 22406 0.66 0.947278
Target:  5'- uCAGCCgGGaACCCuggaGGUAGGGUuacaAAGGg -3'
miRNA:   3'- -GUUGGgUCaUGGGc---CCGUCCCG----UUCC- -5'
10425 3' -58.5 NC_002687.1 + 27794 0.66 0.934257
Target:  5'- aCAACCCaaAGUcgGCCaagaGGGUAGcuaGCAGGGg -3'
miRNA:   3'- -GUUGGG--UCA--UGGg---CCCGUCc--CGUUCC- -5'
10425 3' -58.5 NC_002687.1 + 194801 0.66 0.934257
Target:  5'- --uUCCAagauGUGCCCGGGguGuGGaGAGGa -3'
miRNA:   3'- guuGGGU----CAUGGGCCCguC-CCgUUCC- -5'
10425 3' -58.5 NC_002687.1 + 220392 0.66 0.934257
Target:  5'- --uUCCAagauGUGCCCGGGguGuGGaGAGGa -3'
miRNA:   3'- guuGGGU----CAUGGGCCCguC-CCgUUCC- -5'
10425 3' -58.5 NC_002687.1 + 87435 0.67 0.924539
Target:  5'- gAugCCGGUGCaaCCGGugcaaGCGGGGCAGu- -3'
miRNA:   3'- gUugGGUCAUG--GGCC-----CGUCCCGUUcc -5'
10425 3' -58.5 NC_002687.1 + 278128 0.67 0.919367
Target:  5'- -uGCCCGauUAUCCGGGUGGGGguGGu -3'
miRNA:   3'- guUGGGUc-AUGGGCCCGUCCCguUCc -5'
10425 3' -58.5 NC_002687.1 + 224569 0.67 0.919367
Target:  5'- aCAACCCAGcucCUCGaGCAGGcGCAGGc -3'
miRNA:   3'- -GUUGGGUCau-GGGCcCGUCC-CGUUCc -5'
10425 3' -58.5 NC_002687.1 + 107650 0.67 0.902606
Target:  5'- cCAAUCCAaacgGUACCC-GGCGGaaacguuuucGGCGAGGu -3'
miRNA:   3'- -GUUGGGU----CAUGGGcCCGUC----------CCGUUCC- -5'
10425 3' -58.5 NC_002687.1 + 238728 0.67 0.902606
Target:  5'- aCGACCU-GUACaCGGGUucGGGCAAGa -3'
miRNA:   3'- -GUUGGGuCAUGgGCCCGu-CCCGUUCc -5'
10425 3' -58.5 NC_002687.1 + 278099 0.68 0.890413
Target:  5'- -uGCCCGauUAUCCGGGUGGGGguGGa -3'
miRNA:   3'- guUGGGUc-AUGGGCCCGUCCCguUCc -5'
10425 3' -58.5 NC_002687.1 + 85415 0.68 0.856528
Target:  5'- gGGCgCCGGUGCUCaGGGCccucAGGGUccuAAGGg -3'
miRNA:   3'- gUUG-GGUCAUGGG-CCCG----UCCCG---UUCC- -5'
10425 3' -58.5 NC_002687.1 + 129456 0.69 0.8492
Target:  5'- gAACCauuucaAG-ACCUGGcuuaagcgcacGCAGGGCAAGGa -3'
miRNA:   3'- gUUGGg-----UCaUGGGCC-----------CGUCCCGUUCC- -5'
10425 3' -58.5 NC_002687.1 + 18675 0.69 0.8492
Target:  5'- -cGCCC---GCCCccgaagcagGGGCAGGaGCAGGGg -3'
miRNA:   3'- guUGGGucaUGGG---------CCCGUCC-CGUUCC- -5'
10425 3' -58.5 NC_002687.1 + 270398 0.69 0.834036
Target:  5'- aCGAUaCAGgcUUCGGGCGGGGCugcgGAGGg -3'
miRNA:   3'- -GUUGgGUCauGGGCCCGUCCCG----UUCC- -5'
10425 3' -58.5 NC_002687.1 + 268121 0.69 0.834036
Target:  5'- aCGAUaCAGgcUUCGGGCGGGGCugcGGGg -3'
miRNA:   3'- -GUUGgGUCauGGGCCCGUCCCGu--UCC- -5'
10425 3' -58.5 NC_002687.1 + 226802 0.7 0.75863
Target:  5'- gGugCCGGUGCCgGuGGCGGuGGCGGuGGc -3'
miRNA:   3'- gUugGGUCAUGGgC-CCGUC-CCGUU-CC- -5'
10425 3' -58.5 NC_002687.1 + 308329 0.7 0.75863
Target:  5'- uCGACCCGuGUGuCUCucGCGGGGCAAGGu -3'
miRNA:   3'- -GUUGGGU-CAU-GGGccCGUCCCGUUCC- -5'
10425 3' -58.5 NC_002687.1 + 273893 0.71 0.749666
Target:  5'- uCAACUCAaugcugacagauGUugCCaGGGCuguGGGCAAGGu -3'
miRNA:   3'- -GUUGGGU------------CAugGG-CCCGu--CCCGUUCC- -5'
10425 3' -58.5 NC_002687.1 + 35838 0.72 0.684815
Target:  5'- uCAACCaCAcUGCCCacGGguGGGCGAGGc -3'
miRNA:   3'- -GUUGG-GUcAUGGGc-CCguCCCGUUCC- -5'
10425 3' -58.5 NC_002687.1 + 113975 0.72 0.646757
Target:  5'- gGACgC-GUGCCCGGGCccaGGCAAGGc -3'
miRNA:   3'- gUUGgGuCAUGGGCCCGuc-CCGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.