miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10434 3' -61.9 NC_002687.1 + 332407 0.72 0.503615
Target:  5'- gGCCGUUGUGGUccucaaGGCGGCGCaUGGcCa -3'
miRNA:   3'- -UGGUAACGCCG------CCGCCGCGaACCcGc -5'
10434 3' -61.9 NC_002687.1 + 332266 1.07 0.002582
Target:  5'- cACCAUUGCGGCGGCGGCGCUUGGGCGu -3'
miRNA:   3'- -UGGUAACGCCGCCGCCGCGAACCCGC- -5'
10434 3' -61.9 NC_002687.1 + 316184 0.7 0.623446
Target:  5'- uUCGggUGCGGCGGCGGCacccgGCgc-GGCGg -3'
miRNA:   3'- uGGUa-ACGCCGCCGCCG-----CGaacCCGC- -5'
10434 3' -61.9 NC_002687.1 + 307642 0.77 0.260024
Target:  5'- gGCgGUgGCGGUGGUGGUGCUggcacGGGCGg -3'
miRNA:   3'- -UGgUAaCGCCGCCGCCGCGAa----CCCGC- -5'
10434 3' -61.9 NC_002687.1 + 298411 0.73 0.434923
Target:  5'- -----cGCGGCGGCGGcCGCggccuuaucaaUUGGGCGc -3'
miRNA:   3'- ugguaaCGCCGCCGCC-GCG-----------AACCCGC- -5'
10434 3' -61.9 NC_002687.1 + 298349 0.72 0.477258
Target:  5'- cGCCAgucggaaGCGGUGGCGGCcgcaacGCaaGGGCGu -3'
miRNA:   3'- -UGGUaa-----CGCCGCCGCCG------CGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 292789 0.75 0.335901
Target:  5'- aGCgGUgGCGGCcGCGGCGCacGGGCGa -3'
miRNA:   3'- -UGgUAaCGCCGcCGCCGCGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 292679 0.69 0.670423
Target:  5'- uACUGcUGUGGCGGUGGU-UUUGGGCa -3'
miRNA:   3'- -UGGUaACGCCGCCGCCGcGAACCCGc -5'
10434 3' -61.9 NC_002687.1 + 291977 0.66 0.819953
Target:  5'- uACCAUaaacgUGCGGCGG-GGCuacuGUUUGGuGCc -3'
miRNA:   3'- -UGGUA-----ACGCCGCCgCCG----CGAACC-CGc -5'
10434 3' -61.9 NC_002687.1 + 291572 0.66 0.835448
Target:  5'- uGCCGUUGgGGCuGUGGUcaucuuuucuGCUUccGGGCa -3'
miRNA:   3'- -UGGUAACgCCGcCGCCG----------CGAA--CCCGc -5'
10434 3' -61.9 NC_002687.1 + 283583 0.66 0.842964
Target:  5'- uGCCAaacaGC-GUGGUGaaGCGCUUGGGCu -3'
miRNA:   3'- -UGGUaa--CGcCGCCGC--CGCGAACCCGc -5'
10434 3' -61.9 NC_002687.1 + 281781 0.66 0.803881
Target:  5'- cCCGUUGCgcgugugggaacGGCGGgGGCagggGCcgGGGCGc -3'
miRNA:   3'- uGGUAACG------------CCGCCgCCG----CGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 280962 0.66 0.842964
Target:  5'- gGCCugggugGCGGCaGCGGCGgCcgGGGUu -3'
miRNA:   3'- -UGGuaa---CGCCGcCGCCGC-GaaCCCGc -5'
10434 3' -61.9 NC_002687.1 + 278941 0.66 0.842964
Target:  5'- cACCuuuaucgGUGGUGGCaGCGCagggggGGGCa -3'
miRNA:   3'- -UGGuaa----CGCCGCCGcCGCGaa----CCCGc -5'
10434 3' -61.9 NC_002687.1 + 263178 0.74 0.394844
Target:  5'- cUCGUUGCGGCGGCaGGUGaCgaaGGGCa -3'
miRNA:   3'- uGGUAACGCCGCCG-CCGC-Gaa-CCCGc -5'
10434 3' -61.9 NC_002687.1 + 241871 0.66 0.835448
Target:  5'- gGCCAa--CGGUGGCGGCGUgacuuucGGCa -3'
miRNA:   3'- -UGGUaacGCCGCCGCCGCGaac----CCGc -5'
10434 3' -61.9 NC_002687.1 + 226810 0.73 0.460071
Target:  5'- uGCCGgugGCGGUGGCGGUgGCgguGGCGg -3'
miRNA:   3'- -UGGUaa-CGCCGCCGCCG-CGaacCCGC- -5'
10434 3' -61.9 NC_002687.1 + 225584 0.66 0.811986
Target:  5'- gGCCGgaGCgGGgGGUGGUGCUggagacGGCGg -3'
miRNA:   3'- -UGGUaaCG-CCgCCGCCGCGAac----CCGC- -5'
10434 3' -61.9 NC_002687.1 + 225489 0.67 0.793149
Target:  5'- aGCUuacGCGGCGGCGGCgGCggaacguaagaggaaGGGUGc -3'
miRNA:   3'- -UGGuaaCGCCGCCGCCG-CGaa-------------CCCGC- -5'
10434 3' -61.9 NC_002687.1 + 225012 0.67 0.761519
Target:  5'- aGCUGgaGCgGGUGGUGGCGU--GGGCGu -3'
miRNA:   3'- -UGGUaaCG-CCGCCGCCGCGaaCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.