miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10461 5' -59.1 NC_002687.1 + 142881 0.66 0.947475
Target:  5'- cCCGUCguCGgGGuUUCCGUacuggggguaaGGGCCACCAa -3'
miRNA:   3'- -GGCAG--GCgCUuGAGGCG-----------CUCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 121488 0.66 0.94342
Target:  5'- cCCGgauUCCGaGggUUCCGCcacGGGCCACg- -3'
miRNA:   3'- -GGC---AGGCgCuuGAGGCG---CUCGGUGgu -5'
10461 5' -59.1 NC_002687.1 + 34004 0.66 0.94342
Target:  5'- uCCGUCUGCacAACUUCGaGAGgUACCAg -3'
miRNA:   3'- -GGCAGGCGc-UUGAGGCgCUCgGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 200708 0.66 0.942165
Target:  5'- aCGUCUGCGAagGCUgCCGCcAGCacgucgagcacgucCGCCAa -3'
miRNA:   3'- gGCAGGCGCU--UGA-GGCGcUCG--------------GUGGU- -5'
10461 5' -59.1 NC_002687.1 + 219058 0.66 0.939167
Target:  5'- aUG-CgGCGuGCUCCGCG-GCCACgGa -3'
miRNA:   3'- gGCaGgCGCuUGAGGCGCuCGGUGgU- -5'
10461 5' -59.1 NC_002687.1 + 141597 0.66 0.939167
Target:  5'- aCGUCgaCGCGGccguGCUCCGCG-GCaCGCUc -3'
miRNA:   3'- gGCAG--GCGCU----UGAGGCGCuCG-GUGGu -5'
10461 5' -59.1 NC_002687.1 + 78471 0.66 0.934713
Target:  5'- uUCGUUCGCGAAgUCUGCacGCCugUg -3'
miRNA:   3'- -GGCAGGCGCUUgAGGCGcuCGGugGu -5'
10461 5' -59.1 NC_002687.1 + 69053 0.66 0.930058
Target:  5'- gCGguggCgGUGGugUCgGCGGuGCCGCCAg -3'
miRNA:   3'- gGCa---GgCGCUugAGgCGCU-CGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 263489 0.67 0.927169
Target:  5'- cCUGUaCUGCcuGGACUCUGCGucugcggaaauccuGCCGCCAu -3'
miRNA:   3'- -GGCA-GGCG--CUUGAGGCGCu-------------CGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 17857 0.67 0.920143
Target:  5'- gCCGcUCUGCuuguGCUCUGCGcaaaacGCCGCCGg -3'
miRNA:   3'- -GGC-AGGCGcu--UGAGGCGCu-----CGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 332168 0.67 0.917012
Target:  5'- uCCGuuUCCGCGAcacugGCUCCGUcgcugucggaaacauGuGCCAUCGg -3'
miRNA:   3'- -GGC--AGGCGCU-----UGAGGCG---------------CuCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 227349 0.67 0.909423
Target:  5'- cUCGUCgGCgcuGAugUCCGauucaguuucgGAGCCACCGa -3'
miRNA:   3'- -GGCAGgCG---CUugAGGCg----------CUCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 167525 0.67 0.903764
Target:  5'- uCCGUugcgCCGCGGaaGCUUCGCGgcaacgucgGGCCuCCAa -3'
miRNA:   3'- -GGCA----GGCGCU--UGAGGCGC---------UCGGuGGU- -5'
10461 5' -59.1 NC_002687.1 + 115914 0.67 0.897907
Target:  5'- gCUGcUCCGCGuACUuuGUGuGCCACg- -3'
miRNA:   3'- -GGC-AGGCGCuUGAggCGCuCGGUGgu -5'
10461 5' -59.1 NC_002687.1 + 180509 0.67 0.897907
Target:  5'- aCUGUCCGgGAaacccGCUCCGCu-GUCgACCAa -3'
miRNA:   3'- -GGCAGGCgCU-----UGAGGCGcuCGG-UGGU- -5'
10461 5' -59.1 NC_002687.1 + 259674 0.67 0.897907
Target:  5'- gCGUUCGCGGugUgucuugauCCGUGuGCCACUu -3'
miRNA:   3'- gGCAGGCGCUugA--------GGCGCuCGGUGGu -5'
10461 5' -59.1 NC_002687.1 + 107748 0.67 0.897907
Target:  5'- uCCG-CCGCGGACUUgGCacGCCGCgAa -3'
miRNA:   3'- -GGCaGGCGCUUGAGgCGcuCGGUGgU- -5'
10461 5' -59.1 NC_002687.1 + 202582 0.68 0.891855
Target:  5'- gCGUCCauGUGGAC-CCGUugGGGUCGCCAc -3'
miRNA:   3'- gGCAGG--CGCUUGaGGCG--CUCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 202227 0.68 0.891855
Target:  5'- cCCG-CC-CGAGCgCgCGUGAGCCACUg -3'
miRNA:   3'- -GGCaGGcGCUUGaG-GCGCUCGGUGGu -5'
10461 5' -59.1 NC_002687.1 + 292426 0.68 0.891855
Target:  5'- aUCGcCCGUGcg--CCGCG-GCCGCCAc -3'
miRNA:   3'- -GGCaGGCGCuugaGGCGCuCGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.