Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10468 | 5' | -55 | NC_002687.1 | + | 308326 | 0.65 | 0.991971 |
Target: 5'- cGUUCGACCCgUGUgUCUcUCGCGGGg -3' miRNA: 3'- cCGAGCUGGGgACA-AGAcGGUGUUCg -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 301755 | 0.71 | 0.87954 |
Target: 5'- uGCUCGACCCCUGUgacccagcaucgUCggagaaaaUGCaCGCAAuGCu -3' miRNA: 3'- cCGAGCUGGGGACA------------AG--------ACG-GUGUU-CG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 299665 | 0.69 | 0.949715 |
Target: 5'- cGGCggCGACaCCCUGaUUUGUUGCcAGCa -3' miRNA: 3'- -CCGa-GCUG-GGGACaAGACGGUGuUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 293612 | 0.66 | 0.985364 |
Target: 5'- aGCUC-ACCCCUGUUCcaugcgUGCuCACAu-- -3' miRNA: 3'- cCGAGcUGGGGACAAG------ACG-GUGUucg -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 287699 | 0.68 | 0.972718 |
Target: 5'- uGGCaUCGACCCCaccgugUGUgaagCUGCuCGCuugucaAGGCa -3' miRNA: 3'- -CCG-AGCUGGGG------ACAa---GACG-GUG------UUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 284662 | 0.66 | 0.988379 |
Target: 5'- aGGCgCaGCCCCUGgugCUGCCGgAAa- -3' miRNA: 3'- -CCGaGcUGGGGACaa-GACGGUgUUcg -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 283542 | 0.7 | 0.904999 |
Target: 5'- uGCUgCcGCCCCUGUUgCUGCCGCuucggauGCu -3' miRNA: 3'- cCGA-GcUGGGGACAA-GACGGUGuu-----CG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 282304 | 0.68 | 0.972718 |
Target: 5'- cGGCaCcGCCCCUGcucCUGCCGCGAc- -3' miRNA: 3'- -CCGaGcUGGGGACaa-GACGGUGUUcg -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 275684 | 0.67 | 0.983649 |
Target: 5'- aGCU-GACCCCUc-UCgGCCGCGAGa -3' miRNA: 3'- cCGAgCUGGGGAcaAGaCGGUGUUCg -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 269549 | 0.71 | 0.892686 |
Target: 5'- uGUUCGACCCgUGU--UGCCGUAGGCc -3' miRNA: 3'- cCGAGCUGGGgACAagACGGUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 263190 | 0.69 | 0.936764 |
Target: 5'- cGGCUUGugUCCagGUUUUGCCuuCGAGa -3' miRNA: 3'- -CCGAGCugGGGa-CAAGACGGu-GUUCg -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 247502 | 0.68 | 0.970015 |
Target: 5'- gGGCUUGccaauGCUCUUGUUggugGUCACGAGCg -3' miRNA: 3'- -CCGAGC-----UGGGGACAAga--CGGUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 244516 | 0.66 | 0.990888 |
Target: 5'- uGGCUCGuugUCCCUGUauUCaucGCgCACAcGCg -3' miRNA: 3'- -CCGAGCu--GGGGACA--AGa--CG-GUGUuCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 238842 | 0.72 | 0.843241 |
Target: 5'- uGGCggaaagauUCGACagagaCCUGUauuuUCUGCCAUAAGUc -3' miRNA: 3'- -CCG--------AGCUGg----GGACA----AGACGGUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 236381 | 0.67 | 0.977361 |
Target: 5'- cGCUCGAgCgauguacaUGUUCUGCCggcguucGCGAGCg -3' miRNA: 3'- cCGAGCUgGgg------ACAAGACGG-------UGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 235767 | 0.71 | 0.886216 |
Target: 5'- cGGCaUCGACCuCCUGgaUUUGuUCGCGGGCu -3' miRNA: 3'- -CCG-AGCUGG-GGACa-AGAC-GGUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 225928 | 0.73 | 0.811024 |
Target: 5'- cGCUcCGGCCCCag--CUGCC-CGAGCa -3' miRNA: 3'- cCGA-GCUGGGGacaaGACGGuGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 219608 | 0.69 | 0.941296 |
Target: 5'- aGUUUGACCCUUGcUUCUG--GCAGGCa -3' miRNA: 3'- cCGAGCUGGGGAC-AAGACggUGUUCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 210313 | 0.68 | 0.964045 |
Target: 5'- gGGCgcCGACCUCUgcGUUCUGgCGCucGCc -3' miRNA: 3'- -CCGa-GCUGGGGA--CAAGACgGUGuuCG- -5' |
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10468 | 5' | -55 | NC_002687.1 | + | 200840 | 0.69 | 0.945613 |
Target: 5'- aGGCUCGGCaUCUGcuucugUCUGCCccGCAGGa -3' miRNA: 3'- -CCGAGCUGgGGACa-----AGACGG--UGUUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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