miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10469 3' -51.6 NC_002687.1 + 161872 0.66 0.99921
Target:  5'- cGAUCGuaauGUGACUUU-UCGCCAUCUc- -3'
miRNA:   3'- aCUAGU----CGCUGAAAuAGCGGUGGGac -5'
10469 3' -51.6 NC_002687.1 + 332512 0.66 0.99921
Target:  5'- gUGAUCcacccuuuGCGGCUgca--GCaCACCCUGg -3'
miRNA:   3'- -ACUAGu-------CGCUGAaauagCG-GUGGGAC- -5'
10469 3' -51.6 NC_002687.1 + 84889 0.66 0.999179
Target:  5'- cGAUgcCGGUGACgucUGUaccgagcgugaaGCCACCCUGg -3'
miRNA:   3'- aCUA--GUCGCUGaa-AUAg-----------CGGUGGGAC- -5'
10469 3' -51.6 NC_002687.1 + 159811 0.66 0.999042
Target:  5'- cGGUCAGUGACguaacUAUCGCgGUCCa- -3'
miRNA:   3'- aCUAGUCGCUGaa---AUAGCGgUGGGac -5'
10469 3' -51.6 NC_002687.1 + 332027 0.66 0.999042
Target:  5'- aGGUCuuGCaGGCUggccaugCGCCGCCUUGa -3'
miRNA:   3'- aCUAGu-CG-CUGAaaua---GCGGUGGGAC- -5'
10469 3' -51.6 NC_002687.1 + 83642 0.66 0.998967
Target:  5'- gGGUCAGCGagGCUgcugucaaccCGUCACCCUu -3'
miRNA:   3'- aCUAGUCGC--UGAaaua------GCGGUGGGAc -5'
10469 3' -51.6 NC_002687.1 + 291385 0.66 0.998844
Target:  5'- cGAggCAGCuGCUuuuguguuuuuUUAUUGCCGCCCg- -3'
miRNA:   3'- aCUa-GUCGcUGA-----------AAUAGCGGUGGGac -5'
10469 3' -51.6 NC_002687.1 + 24977 0.66 0.998612
Target:  5'- -aAUCAGUGGCUgcgggcccuUCGCCACaCCa- -3'
miRNA:   3'- acUAGUCGCUGAaau------AGCGGUG-GGac -5'
10469 3' -51.6 NC_002687.1 + 255779 0.67 0.998342
Target:  5'- aGAUgAGCGAaaacAUCGCgGCCgCUGg -3'
miRNA:   3'- aCUAgUCGCUgaaaUAGCGgUGG-GAC- -5'
10469 3' -51.6 NC_002687.1 + 261581 0.67 0.998342
Target:  5'- gGGUCAgcaauccucGCGACUUUGcaaCGCCGCCa-- -3'
miRNA:   3'- aCUAGU---------CGCUGAAAUa--GCGGUGGgac -5'
10469 3' -51.6 NC_002687.1 + 121771 0.67 0.997666
Target:  5'- gUGAUCuGGaggugaaGACUUUGcaaagCGCCGCCCUc -3'
miRNA:   3'- -ACUAG-UCg------CUGAAAUa----GCGGUGGGAc -5'
10469 3' -51.6 NC_002687.1 + 159742 0.67 0.99725
Target:  5'- -uGUCGGCGucgucgGCUUg--UGCCAUCCUGg -3'
miRNA:   3'- acUAGUCGC------UGAAauaGCGGUGGGAC- -5'
10469 3' -51.6 NC_002687.1 + 248942 0.67 0.996775
Target:  5'- gGGUCAGUGAUggUAUCGUacCCCUc -3'
miRNA:   3'- aCUAGUCGCUGaaAUAGCGguGGGAc -5'
10469 3' -51.6 NC_002687.1 + 160312 0.67 0.996775
Target:  5'- uUGG-CGGCGGCUgccuUgGCCGCCCc- -3'
miRNA:   3'- -ACUaGUCGCUGAaau-AgCGGUGGGac -5'
10469 3' -51.6 NC_002687.1 + 211903 0.68 0.996234
Target:  5'- cGGUCAGCGAguuccaCUcauuuucagaaUUGcCGCCACCCg- -3'
miRNA:   3'- aCUAGUCGCU------GA-----------AAUaGCGGUGGGac -5'
10469 3' -51.6 NC_002687.1 + 256636 0.68 0.994147
Target:  5'- -aGUCGGCGGCgcUAUCGCU-CCCg- -3'
miRNA:   3'- acUAGUCGCUGaaAUAGCGGuGGGac -5'
10469 3' -51.6 NC_002687.1 + 153991 0.69 0.987234
Target:  5'- cGGUCAGCGAaguu-UCGCCcaauCCCUc -3'
miRNA:   3'- aCUAGUCGCUgaaauAGCGGu---GGGAc -5'
10469 3' -51.6 NC_002687.1 + 158709 0.7 0.983888
Target:  5'- aGAUCuGUGAU---GUCGCCACCUa- -3'
miRNA:   3'- aCUAGuCGCUGaaaUAGCGGUGGGac -5'
10469 3' -51.6 NC_002687.1 + 159178 0.72 0.940385
Target:  5'- cGAcCGGCGGCgacggcgguccgucgUUGUCGCCGCCgUGc -3'
miRNA:   3'- aCUaGUCGCUGa--------------AAUAGCGGUGGgAC- -5'
10469 3' -51.6 NC_002687.1 + 171617 0.72 0.939923
Target:  5'- aUGGUCAGgGAUUacUUGaacCGCCACCCUa -3'
miRNA:   3'- -ACUAGUCgCUGA--AAUa--GCGGUGGGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.