miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10469 5' -49.9 NC_002687.1 + 156634 0.66 0.999903
Target:  5'- cGACAGGAgugugguuucGGCGGAGcuguucAGGAUgGGCUc -3'
miRNA:   3'- -CUGUCCUa---------CCGCCUU------UUCUAgUUGGa -5'
10469 5' -49.9 NC_002687.1 + 324765 0.66 0.99984
Target:  5'- uGGCGuGGccGGCGGGAAGGuuuauaGACCUg -3'
miRNA:   3'- -CUGU-CCuaCCGCCUUUUCuag---UUGGA- -5'
10469 5' -49.9 NC_002687.1 + 301705 0.66 0.99984
Target:  5'- cGACAgccuGGAcccGGCGGAcaugaacaaGAAGAUCAGCg- -3'
miRNA:   3'- -CUGU----CCUa--CCGCCU---------UUUCUAGUUGga -5'
10469 5' -49.9 NC_002687.1 + 324381 0.66 0.99984
Target:  5'- uGGCGuGGccGGCGGGAAGGuuuauaGACCUg -3'
miRNA:   3'- -CUGU-CCuaCCGCCUUUUCuag---UUGGA- -5'
10469 5' -49.9 NC_002687.1 + 323614 0.66 0.99984
Target:  5'- uGGCGuGGccGGCGGGAAGGuuuauaGACCUg -3'
miRNA:   3'- -CUGU-CCuaCCGCCUUUUCuag---UUGGA- -5'
10469 5' -49.9 NC_002687.1 + 84047 0.66 0.99984
Target:  5'- --gAGGGUGGgguCGGAGAccAGAgcgCAACCUu -3'
miRNA:   3'- cugUCCUACC---GCCUUU--UCUa--GUUGGA- -5'
10469 5' -49.9 NC_002687.1 + 323998 0.66 0.99984
Target:  5'- uGGCGuGGccGGCGGGAAGGuuuauaGACCUg -3'
miRNA:   3'- -CUGU-CCuaCCGCCUUUUCuag---UUGGA- -5'
10469 5' -49.9 NC_002687.1 + 291449 0.66 0.999743
Target:  5'- aGAgAGGAgGGgGGggGGGGUgaGACCg -3'
miRNA:   3'- -CUgUCCUaCCgCCuuUUCUAg-UUGGa -5'
10469 5' -49.9 NC_002687.1 + 295564 0.66 0.999737
Target:  5'- aGACGGuagcggccaaGAUGGCGGAguuuuggcgcacgAAAGA-CGACCg -3'
miRNA:   3'- -CUGUC----------CUACCGCCU-------------UUUCUaGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 308641 0.67 0.999677
Target:  5'- gGACAGGA-GGCGcGcgGAGA--GACCUg -3'
miRNA:   3'- -CUGUCCUaCCGC-CuuUUCUagUUGGA- -5'
10469 5' -49.9 NC_002687.1 + 200977 0.67 0.999677
Target:  5'- gGGCAGGcgGGCGuGuuuAGGUCggUCg -3'
miRNA:   3'- -CUGUCCuaCCGC-CuuuUCUAGuuGGa -5'
10469 5' -49.9 NC_002687.1 + 212359 0.67 0.999677
Target:  5'- cGACAGcGGUGGUGGcAGucuuGGUCGACg- -3'
miRNA:   3'- -CUGUC-CUACCGCCuUUu---CUAGUUGga -5'
10469 5' -49.9 NC_002687.1 + 131826 0.67 0.99967
Target:  5'- cGACAGuGGUgagacaugaauuaGGCGGGAAGGGUC-AUCg -3'
miRNA:   3'- -CUGUC-CUA-------------CCGCCUUUUCUAGuUGGa -5'
10469 5' -49.9 NC_002687.1 + 223911 0.67 0.999598
Target:  5'- gGAuCGGGAUGGCuccGAcgGGAGAUCGACa- -3'
miRNA:   3'- -CU-GUCCUACCGc--CU--UUUCUAGUUGga -5'
10469 5' -49.9 NC_002687.1 + 330245 0.67 0.999598
Target:  5'- cGAgAGaGGUGGUGGAaauggAAAGGUUcGCCUg -3'
miRNA:   3'- -CUgUC-CUACCGCCU-----UUUCUAGuUGGA- -5'
10469 5' -49.9 NC_002687.1 + 330339 0.67 0.999598
Target:  5'- cGAgAGaGGUGGUGGAaauggAAAGGUUcGCCUg -3'
miRNA:   3'- -CUgUC-CUACCGCCU-----UUUCUAGuUGGA- -5'
10469 5' -49.9 NC_002687.1 + 235337 0.67 0.999502
Target:  5'- aACAGGucAUGGUcGAAGAGGUCAAgCa -3'
miRNA:   3'- cUGUCC--UACCGcCUUUUCUAGUUgGa -5'
10469 5' -49.9 NC_002687.1 + 20858 0.67 0.999502
Target:  5'- aGGCGGGGgcggaGGUGGAugccuccaGAGGAUUGGCCc -3'
miRNA:   3'- -CUGUCCUa----CCGCCU--------UUUCUAGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 66836 0.67 0.999502
Target:  5'- --aGGGAUGGCGGAuccGAUCuuGGCUUu -3'
miRNA:   3'- cugUCCUACCGCCUuuuCUAG--UUGGA- -5'
10469 5' -49.9 NC_002687.1 + 111546 0.67 0.999502
Target:  5'- aGAgGGaGAUGGCGGAGA----CGACCUu -3'
miRNA:   3'- -CUgUC-CUACCGCCUUUucuaGUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.