miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10539 5' -49.9 NC_002687.1 + 217464 1.08 0.022931
Target:  5'- aAUUUACCAUGCUCGCGAACCCAACACu -3'
miRNA:   3'- -UAAAUGGUACGAGCGCUUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 176022 0.85 0.441938
Target:  5'- --gUACCAUGCgUCGCGAACUUGACACg -3'
miRNA:   3'- uaaAUGGUACG-AGCGCUUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 236761 0.79 0.721673
Target:  5'- --cUACCGcGCUCGCGAACgCCGGCAg -3'
miRNA:   3'- uaaAUGGUaCGAGCGCUUG-GGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 319233 0.78 0.807199
Target:  5'- ---gGCCGUGCuucucUCGCGAAcgcuCCCGACACa -3'
miRNA:   3'- uaaaUGGUACG-----AGCGCUU----GGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 257400 0.77 0.824664
Target:  5'- --aUGC--UGCUCGCGAuguGCCCGACGCg -3'
miRNA:   3'- uaaAUGguACGAGCGCU---UGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 217790 0.73 0.948497
Target:  5'- -gUUACCGUGCcCGC-AGCgCCAACGCu -3'
miRNA:   3'- uaAAUGGUACGaGCGcUUG-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 182485 0.73 0.960301
Target:  5'- ---cGCCAgcUGCgcuucgggUCGCGAuCCCAGCACa -3'
miRNA:   3'- uaaaUGGU--ACG--------AGCGCUuGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 56834 0.73 0.963781
Target:  5'- --aUGCCGUGgaCcgccuCGAACCCAACACu -3'
miRNA:   3'- uaaAUGGUACgaGc----GCUUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 246682 0.72 0.975572
Target:  5'- ----uCCGUGCuuuucUCGCGAAcacuCCCGACACa -3'
miRNA:   3'- uaaauGGUACG-----AGCGCUU----GGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 113562 0.71 0.986028
Target:  5'- ---cACCAUGUUCGCGAaggcauccagguAUCCGGCGu -3'
miRNA:   3'- uaaaUGGUACGAGCGCU------------UGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 257409 0.7 0.989079
Target:  5'- ---aACCGacCUCGCucGCCCAACACg -3'
miRNA:   3'- uaaaUGGUacGAGCGcuUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 56431 0.7 0.989079
Target:  5'- ---aACguUGCUCaCGAACaCCAGCACg -3'
miRNA:   3'- uaaaUGguACGAGcGCUUG-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 212402 0.7 0.992653
Target:  5'- ---gGCCuUGUUCGCGuccACCCAgaACACu -3'
miRNA:   3'- uaaaUGGuACGAGCGCu--UGGGU--UGUG- -5'
10539 5' -49.9 NC_002687.1 + 78033 0.69 0.994466
Target:  5'- -----gCGUGCUCGaGAACaCCAGCGCu -3'
miRNA:   3'- uaaaugGUACGAGCgCUUG-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 76607 0.69 0.994466
Target:  5'- --aUGCCAucUGCcCGCGGuCCCAGCGu -3'
miRNA:   3'- uaaAUGGU--ACGaGCGCUuGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 297387 0.69 0.995226
Target:  5'- ---gGCCAUGCucaUCGCG-ACCCGAUu- -3'
miRNA:   3'- uaaaUGGUACG---AGCGCuUGGGUUGug -5'
10539 5' -49.9 NC_002687.1 + 13654 0.69 0.996493
Target:  5'- --aUACCugcUGCgUCGCucuuACCCAACGCa -3'
miRNA:   3'- uaaAUGGu--ACG-AGCGcu--UGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 199276 0.69 0.996493
Target:  5'- --aUACUAUGCUCGCGAugaaGACAUc -3'
miRNA:   3'- uaaAUGGUACGAGCGCUugggUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 137950 0.68 0.998755
Target:  5'- ---aACCuuUGCUCGacuuCGuACCCGACGCg -3'
miRNA:   3'- uaaaUGGu-ACGAGC----GCuUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 111083 0.67 0.998971
Target:  5'- -gUUGCUGUGCau-CGGAUCCGACGCg -3'
miRNA:   3'- uaAAUGGUACGagcGCUUGGGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.