miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10539 5' -49.9 NC_002687.1 + 13654 0.69 0.996493
Target:  5'- --aUACCugcUGCgUCGCucuuACCCAACGCa -3'
miRNA:   3'- uaaAUGGu--ACG-AGCGcu--UGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 19436 0.67 0.998971
Target:  5'- ---aGCCAUGCUCGCuuGAcgcguACCUGGCGu -3'
miRNA:   3'- uaaaUGGUACGAGCG--CU-----UGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 26767 0.67 0.998971
Target:  5'- --cUGCUAUGUcagaCGCGAGCCCGGgAUu -3'
miRNA:   3'- uaaAUGGUACGa---GCGCUUGGGUUgUG- -5'
10539 5' -49.9 NC_002687.1 + 56431 0.7 0.989079
Target:  5'- ---aACguUGCUCaCGAACaCCAGCACg -3'
miRNA:   3'- uaaaUGguACGAGcGCUUG-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 56834 0.73 0.963781
Target:  5'- --aUGCCGUGgaCcgccuCGAACCCAACACu -3'
miRNA:   3'- uaaAUGGUACgaGc----GCUUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 76607 0.69 0.994466
Target:  5'- --aUGCCAucUGCcCGCGGuCCCAGCGu -3'
miRNA:   3'- uaaAUGGU--ACGaGCGCUuGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 78033 0.69 0.994466
Target:  5'- -----gCGUGCUCGaGAACaCCAGCGCu -3'
miRNA:   3'- uaaaugGUACGAGCgCUUG-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 88567 0.66 0.999635
Target:  5'- ---cGCCGaaCUCGCGGcccGCgCCAGCGCg -3'
miRNA:   3'- uaaaUGGUacGAGCGCU---UG-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 88673 0.67 0.999308
Target:  5'- ---gACCAUGaaCGCGAACUCAccccCGCg -3'
miRNA:   3'- uaaaUGGUACgaGCGCUUGGGUu---GUG- -5'
10539 5' -49.9 NC_002687.1 + 111083 0.67 0.998971
Target:  5'- -gUUGCUGUGCau-CGGAUCCGACGCg -3'
miRNA:   3'- uaAAUGGUACGagcGCUUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 113562 0.71 0.986028
Target:  5'- ---cACCAUGUUCGCGAaggcauccagguAUCCGGCGu -3'
miRNA:   3'- uaaaUGGUACGAGCGCU------------UGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 118169 0.67 0.999154
Target:  5'- --cUGCgGUGCagUCGCaGAGCCCGuauGCGCc -3'
miRNA:   3'- uaaAUGgUACG--AGCG-CUUGGGU---UGUG- -5'
10539 5' -49.9 NC_002687.1 + 137950 0.68 0.998755
Target:  5'- ---aACCuuUGCUCGacuuCGuACCCGACGCg -3'
miRNA:   3'- uaaaUGGu-ACGAGC----GCuUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 176022 0.85 0.441938
Target:  5'- --gUACCAUGCgUCGCGAACUUGACACg -3'
miRNA:   3'- uaaAUGGUACG-AGCGCUUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 182485 0.73 0.960301
Target:  5'- ---cGCCAgcUGCgcuucgggUCGCGAuCCCAGCACa -3'
miRNA:   3'- uaaaUGGU--ACG--------AGCGCUuGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 195271 0.67 0.998971
Target:  5'- ---aGCCAUGCUCGCuuGAcgcguACCUGGCGu -3'
miRNA:   3'- uaaaUGGUACGAGCG--CU-----UGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 199276 0.69 0.996493
Target:  5'- --aUACUAUGCUCGCGAugaaGACAUc -3'
miRNA:   3'- uaaAUGGUACGAGCGCUugggUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 204694 0.67 0.999545
Target:  5'- uGUUUGCCGauuucggGCUCuCGGAgaCCAACACg -3'
miRNA:   3'- -UAAAUGGUa------CGAGcGCUUg-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 212402 0.7 0.992653
Target:  5'- ---gGCCuUGUUCGCGuccACCCAgaACACu -3'
miRNA:   3'- uaaaUGGuACGAGCGCu--UGGGU--UGUG- -5'
10539 5' -49.9 NC_002687.1 + 215522 0.67 0.999437
Target:  5'- ---gGCCAUGCccUCGCuGACCCAGuCGu -3'
miRNA:   3'- uaaaUGGUACG--AGCGcUUGGGUU-GUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.