miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10539 5' -49.9 NC_002687.1 + 257409 0.7 0.989079
Target:  5'- ---aACCGacCUCGCucGCCCAACACg -3'
miRNA:   3'- uaaaUGGUacGAGCGcuUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 113562 0.71 0.986028
Target:  5'- ---cACCAUGUUCGCGAaggcauccagguAUCCGGCGu -3'
miRNA:   3'- uaaaUGGUACGAGCGCU------------UGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 56834 0.73 0.963781
Target:  5'- --aUGCCGUGgaCcgccuCGAACCCAACACu -3'
miRNA:   3'- uaaAUGGUACgaGc----GCUUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 182485 0.73 0.960301
Target:  5'- ---cGCCAgcUGCgcuucgggUCGCGAuCCCAGCACa -3'
miRNA:   3'- uaaaUGGU--ACG--------AGCGCUuGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 319233 0.78 0.807199
Target:  5'- ---gGCCGUGCuucucUCGCGAAcgcuCCCGACACa -3'
miRNA:   3'- uaaaUGGUACG-----AGCGCUU----GGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 217464 1.08 0.022931
Target:  5'- aAUUUACCAUGCUCGCGAACCCAACACu -3'
miRNA:   3'- -UAAAUGGUACGAGCGCUUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 251319 0.66 0.999708
Target:  5'- cGUUUGCgAUGCacUCGUaGACaCCGACGCc -3'
miRNA:   3'- -UAAAUGgUACG--AGCGcUUG-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 88567 0.66 0.999635
Target:  5'- ---cGCCGaaCUCGCGGcccGCgCCAGCGCg -3'
miRNA:   3'- uaaaUGGUacGAGCGCU---UG-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 118169 0.67 0.999154
Target:  5'- --cUGCgGUGCagUCGCaGAGCCCGuauGCGCc -3'
miRNA:   3'- uaaAUGgUACG--AGCG-CUUGGGU---UGUG- -5'
10539 5' -49.9 NC_002687.1 + 220862 0.67 0.998971
Target:  5'- ---aGCCAUGCUCGCuuGAcgcguACCUGGCGu -3'
miRNA:   3'- uaaaUGGUACGAGCG--CU-----UGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 19436 0.67 0.998971
Target:  5'- ---aGCCAUGCUCGCuuGAcgcguACCUGGCGu -3'
miRNA:   3'- uaaaUGGUACGAGCG--CU-----UGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 212402 0.7 0.992653
Target:  5'- ---gGCCuUGUUCGCGuccACCCAgaACACu -3'
miRNA:   3'- uaaaUGGuACGAGCGCu--UGGGU--UGUG- -5'
10539 5' -49.9 NC_002687.1 + 329083 0.67 0.999154
Target:  5'- -aUUAUgGUGCUUGUucACUCAGCACc -3'
miRNA:   3'- uaAAUGgUACGAGCGcuUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 297387 0.69 0.995226
Target:  5'- ---gGCCAUGCucaUCGCG-ACCCGAUu- -3'
miRNA:   3'- uaaaUGGUACG---AGCGCuUGGGUUGug -5'
10539 5' -49.9 NC_002687.1 + 195271 0.67 0.998971
Target:  5'- ---aGCCAUGCUCGCuuGAcgcguACCUGGCGu -3'
miRNA:   3'- uaaaUGGUACGAGCG--CU-----UGGGUUGUg -5'
10539 5' -49.9 NC_002687.1 + 88673 0.67 0.999308
Target:  5'- ---gACCAUGaaCGCGAACUCAccccCGCg -3'
miRNA:   3'- uaaaUGGUACgaGCGCUUGGGUu---GUG- -5'
10539 5' -49.9 NC_002687.1 + 318064 0.66 0.999817
Target:  5'- --gUGgCAUacGUUCGCGGAUCCAuCACg -3'
miRNA:   3'- uaaAUgGUA--CGAGCGCUUGGGUuGUG- -5'
10539 5' -49.9 NC_002687.1 + 137950 0.68 0.998755
Target:  5'- ---aACCuuUGCUCGacuuCGuACCCGACGCg -3'
miRNA:   3'- uaaaUGGu-ACGAGC----GCuUGGGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 56431 0.7 0.989079
Target:  5'- ---aACguUGCUCaCGAACaCCAGCACg -3'
miRNA:   3'- uaaaUGguACGAGcGCUUG-GGUUGUG- -5'
10539 5' -49.9 NC_002687.1 + 176022 0.85 0.441938
Target:  5'- --gUACCAUGCgUCGCGAACUUGACACg -3'
miRNA:   3'- uaaAUGGUACG-AGCGCUUGGGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.