Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10546 | 5' | -46.9 | NC_002687.1 | + | 316068 | 0.69 | 0.999927 |
Target: 5'- uCGUgGCGGCAgGAUUcGGUGcgGCUGg -3' miRNA: 3'- -GCAgCGUUGUgCUAAaUCACa-CGAUg -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 310753 | 0.68 | 0.999988 |
Target: 5'- --aCGCAcGCACGAUggcgggUAGUgcacggaaGUGCUACg -3' miRNA: 3'- gcaGCGU-UGUGCUAa-----AUCA--------CACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 296641 | 0.66 | 0.999998 |
Target: 5'- cCGUCGUAGCGuCGAUc--GUGaUGCUGu -3' miRNA: 3'- -GCAGCGUUGU-GCUAaauCAC-ACGAUg -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 281942 | 0.66 | 1 |
Target: 5'- gGUCGCGGCAgGAgcagGGgcgGUGCc-- -3' miRNA: 3'- gCAGCGUUGUgCUaaa-UCa--CACGaug -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 254039 | 0.7 | 0.999745 |
Target: 5'- cCGUUGUGACGCGuuuUUgccUGGUGUGCaACu -3' miRNA: 3'- -GCAGCGUUGUGCu--AA---AUCACACGaUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 231445 | 0.68 | 0.999968 |
Target: 5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugaaacGUGCUGCa -3' miRNA: 3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 231323 | 0.68 | 0.999968 |
Target: 5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugagacGUGCUGCa -3' miRNA: 3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 231201 | 0.68 | 0.999968 |
Target: 5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugaaacGUGCUGCa -3' miRNA: 3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 231104 | 1.13 | 0.027886 |
Target: 5'- aCGUCGCAACACGAUUUAGUGUGCUACa -3' miRNA: 3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 231079 | 0.68 | 0.999968 |
Target: 5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugagacGUGCUGCa -3' miRNA: 3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230982 | 1.12 | 0.030314 |
Target: 5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3' miRNA: 3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230957 | 0.68 | 0.999968 |
Target: 5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugagacGUGCUGCa -3' miRNA: 3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230860 | 1.12 | 0.030314 |
Target: 5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3' miRNA: 3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230835 | 0.69 | 0.999958 |
Target: 5'- gCGaCGUAACACGAUUUaucgugaugcaGGUacacggugagacGUGCUGCa -3' miRNA: 3'- -GCaGCGUUGUGCUAAA-----------UCA------------CACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230738 | 1.12 | 0.030314 |
Target: 5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3' miRNA: 3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230714 | 0.67 | 0.999994 |
Target: 5'- gCGaCGUAACACGAUUUAucGUGaUGCa-- -3' miRNA: 3'- -GCaGCGUUGUGCUAAAU--CAC-ACGaug -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230616 | 1.12 | 0.030314 |
Target: 5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3' miRNA: 3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230594 | 0.67 | 0.999994 |
Target: 5'- gCGaCGUAACACGAUUUAucGUGaUGCa-- -3' miRNA: 3'- -GCaGCGUUGUGCUAAAU--CAC-ACGaug -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230495 | 1.12 | 0.030314 |
Target: 5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3' miRNA: 3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5' |
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10546 | 5' | -46.9 | NC_002687.1 | + | 230474 | 0.68 | 0.999968 |
Target: 5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacgcugaggcGUGCUGCa -3' miRNA: 3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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