miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10578 3' -58.1 NC_002687.1 + 117876 0.66 0.953063
Target:  5'- cGCaGGC-GCUGCaccGUcguccucguucGACGCAgGCGCGg -3'
miRNA:   3'- -CG-CCGuCGACGa--CA-----------CUGCGUgUGCGC- -5'
10578 3' -58.1 NC_002687.1 + 200938 0.66 0.949207
Target:  5'- aGgGGCGGCUugGCacaGUGGCuCAUGCGCGc -3'
miRNA:   3'- -CgCCGUCGA--CGa--CACUGcGUGUGCGC- -5'
10578 3' -58.1 NC_002687.1 + 307615 0.66 0.936399
Target:  5'- gGCGGCGGCggUGCUG-GugGUGgAgGCc -3'
miRNA:   3'- -CGCCGUCG--ACGACaCugCGUgUgCGc -5'
10578 3' -58.1 NC_002687.1 + 173729 0.66 0.931711
Target:  5'- gGCGGCuuGUUGUUGUGcuGCGCGgguuaACGCu -3'
miRNA:   3'- -CGCCGu-CGACGACAC--UGCGUg----UGCGc -5'
10578 3' -58.1 NC_002687.1 + 294724 0.67 0.925302
Target:  5'- aCGGCcaccgagaucauuuGGCUGCUccccGCGCGCGCGCc -3'
miRNA:   3'- cGCCG--------------UCGACGAcac-UGCGUGUGCGc -5'
10578 3' -58.1 NC_002687.1 + 330584 0.67 0.921702
Target:  5'- cCGGCAGCcGUcGUGGCGauuCACGUa -3'
miRNA:   3'- cGCCGUCGaCGaCACUGCgu-GUGCGc -5'
10578 3' -58.1 NC_002687.1 + 311308 0.67 0.921702
Target:  5'- cGCGGCcauuucGCcgUGC-GUGGCGCGC-CGCa -3'
miRNA:   3'- -CGCCGu-----CG--ACGaCACUGCGUGuGCGc -5'
10578 3' -58.1 NC_002687.1 + 332260 0.67 0.921702
Target:  5'- uGCGGCGGCgGCgcuugGGCGUGgAgGCGa -3'
miRNA:   3'- -CGCCGUCGaCGaca--CUGCGUgUgCGC- -5'
10578 3' -58.1 NC_002687.1 + 256269 0.67 0.910849
Target:  5'- aUGGUgAGCUGCUGguuaGAUGCGCuuGCu -3'
miRNA:   3'- cGCCG-UCGACGACa---CUGCGUGugCGc -5'
10578 3' -58.1 NC_002687.1 + 12201 0.67 0.910285
Target:  5'- aGCGGUAGCaGCUGUGGaacgagcCGUAacaGCgGCGg -3'
miRNA:   3'- -CGCCGUCGaCGACACU-------GCGUg--UG-CGC- -5'
10578 3' -58.1 NC_002687.1 + 170420 0.67 0.905109
Target:  5'- gGCGuCGGUUGCUGUaGACGacgACAuCGCGg -3'
miRNA:   3'- -CGCcGUCGACGACA-CUGCg--UGU-GCGC- -5'
10578 3' -58.1 NC_002687.1 + 274423 0.69 0.851984
Target:  5'- cGUGGCGGUUGUUcUGACGCACGg--- -3'
miRNA:   3'- -CGCCGUCGACGAcACUGCGUGUgcgc -5'
10578 3' -58.1 NC_002687.1 + 331220 0.69 0.836849
Target:  5'- aGCGaGCGGgcCUGCUGUGGCGUcaGCGUu -3'
miRNA:   3'- -CGC-CGUC--GACGACACUGCGugUGCGc -5'
10578 3' -58.1 NC_002687.1 + 199985 0.69 0.829032
Target:  5'- aGUGGuCAGCUcGUgGUGAgCGCACugGUGu -3'
miRNA:   3'- -CGCC-GUCGA-CGaCACU-GCGUGugCGC- -5'
10578 3' -58.1 NC_002687.1 + 297325 0.7 0.812929
Target:  5'- uCGGCGGaCUGCUugcggaacucgcGUGcgGCGCGCGCGgGg -3'
miRNA:   3'- cGCCGUC-GACGA------------CAC--UGCGUGUGCgC- -5'
10578 3' -58.1 NC_002687.1 + 238795 0.7 0.812929
Target:  5'- uGUGGC-GUUGUUGUGGCGUgaaagggaugGCAUGCa -3'
miRNA:   3'- -CGCCGuCGACGACACUGCG----------UGUGCGc -5'
10578 3' -58.1 NC_002687.1 + 23964 0.7 0.807983
Target:  5'- cGUGGCGGCguggugguguggcaGCaGUGACGCAgaGCGCa -3'
miRNA:   3'- -CGCCGUCGa-------------CGaCACUGCGUg-UGCGc -5'
10578 3' -58.1 NC_002687.1 + 307645 0.7 0.804657
Target:  5'- gGCGGCGGUgGCgGUgGugGUGCugGCa -3'
miRNA:   3'- -CGCCGUCGaCGaCA-CugCGUGugCGc -5'
10578 3' -58.1 NC_002687.1 + 310934 0.7 0.796246
Target:  5'- aCGGCGGUUGC---GGCGCGcCACGCa -3'
miRNA:   3'- cGCCGUCGACGacaCUGCGU-GUGCGc -5'
10578 3' -58.1 NC_002687.1 + 13317 0.7 0.787705
Target:  5'- cCGGC-GCUGCUGUGAucggcUGCGCuccUGCGa -3'
miRNA:   3'- cGCCGuCGACGACACU-----GCGUGu--GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.