miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10582 3' -49.4 NC_002687.1 + 45926 0.66 0.999947
Target:  5'- cGGGAaguUUUUCAagGCaCCCAUGGAgcucgggGACAg -3'
miRNA:   3'- uCCCU---AAAAGU--UGcGGGUGCCU-------UUGU- -5'
10582 3' -49.4 NC_002687.1 + 168254 0.66 0.999944
Target:  5'- gAGGcGUgucaUUUCAGCGCCCucagucaccacgagGCGGAGuACAg -3'
miRNA:   3'- -UCCcUA----AAAGUUGCGGG--------------UGCCUU-UGU- -5'
10582 3' -49.4 NC_002687.1 + 13057 0.66 0.999933
Target:  5'- gAGGuGAga---GAUGCuCCGCGGAAACu -3'
miRNA:   3'- -UCC-CUaaaagUUGCG-GGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 95030 0.66 0.999933
Target:  5'- uGGGc---UCAAUGUUgGCGGAGACGg -3'
miRNA:   3'- uCCCuaaaAGUUGCGGgUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 202318 0.66 0.999933
Target:  5'- gGGGGAagaaCAGCGCCUgauCGG-AGCAg -3'
miRNA:   3'- -UCCCUaaaaGUUGCGGGu--GCCuUUGU- -5'
10582 3' -49.4 NC_002687.1 + 29072 0.66 0.999933
Target:  5'- cGGGGAUUcUUGuCGCauaCACGGGGAUg -3'
miRNA:   3'- -UCCCUAAaAGUuGCGg--GUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 319595 0.66 0.999933
Target:  5'- cGGGAgcgUUCGcgagagaagcACGgCCugGGAGAUg -3'
miRNA:   3'- uCCCUaa-AAGU----------UGCgGGugCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 306974 0.66 0.999913
Target:  5'- cGGGAUgaugcuaGACGUCUACGGugGCu -3'
miRNA:   3'- uCCCUAaaag---UUGCGGGUGCCuuUGu -5'
10582 3' -49.4 NC_002687.1 + 301468 0.67 0.999887
Target:  5'- aAGGGAaaa-----GCCCAUGGAAGCc -3'
miRNA:   3'- -UCCCUaaaaguugCGGGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 160445 0.67 0.999881
Target:  5'- cAGGGucaggaaGGCcaaGCCCACGGGGACc -3'
miRNA:   3'- -UCCCuaaaag-UUG---CGGGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 309481 0.67 0.999875
Target:  5'- cGGGGAgcuggugacggUCGACGCCUugccCGGGAAg- -3'
miRNA:   3'- -UCCCUaaa--------AGUUGCGGGu---GCCUUUgu -5'
10582 3' -49.4 NC_002687.1 + 272738 0.67 0.999855
Target:  5'- uGGGAcuuuccuuUUUUUAGCGUCCAuCGGAGc-- -3'
miRNA:   3'- uCCCU--------AAAAGUUGCGGGU-GCCUUugu -5'
10582 3' -49.4 NC_002687.1 + 317254 0.67 0.999816
Target:  5'- cGGGAUccggacgUUCGAgcUGCCCGCgcgcuggaGGAAGCAc -3'
miRNA:   3'- uCCCUAa------AAGUU--GCGGGUG--------CCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 205176 0.67 0.999767
Target:  5'- gAGGGAUUgUCgGGCGCguguUCACGaGAGACGa -3'
miRNA:   3'- -UCCCUAAaAG-UUGCG----GGUGC-CUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 169510 0.67 0.999767
Target:  5'- -uGGAU--UCGACGCCUGCGGGc--- -3'
miRNA:   3'- ucCCUAaaAGUUGCGGGUGCCUuugu -5'
10582 3' -49.4 NC_002687.1 + 280932 0.67 0.999707
Target:  5'- gGGGGcccguGUUgaagCAGCGUCgGCGGggGCc -3'
miRNA:   3'- -UCCC-----UAAaa--GUUGCGGgUGCCuuUGu -5'
10582 3' -49.4 NC_002687.1 + 208508 0.67 0.999707
Target:  5'- uGGGAgcagCAGCGaCgAUGGAAGCAg -3'
miRNA:   3'- uCCCUaaaaGUUGCgGgUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 208361 0.67 0.999707
Target:  5'- uGGGAgcagCAGCGaCgAUGGAAGCAg -3'
miRNA:   3'- uCCCUaaaaGUUGCgGgUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 21265 0.68 0.999634
Target:  5'- cGGGGUUUUCAGauuggccccaacUGCCCAUGuuGggGCc -3'
miRNA:   3'- uCCCUAAAAGUU------------GCGGGUGC--CuuUGu -5'
10582 3' -49.4 NC_002687.1 + 219050 0.68 0.999545
Target:  5'- gAGGGAgaaugCGGCGUgcuccgcggCCACGGAGaaGCAg -3'
miRNA:   3'- -UCCCUaaaa-GUUGCG---------GGUGCCUU--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.