Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 330808 | 0.72 | 0.98284 |
Target: 5'- uGGGGAgg--CAugG-CCACGGAGACc -3' miRNA: 3'- -UCCCUaaaaGUugCgGGUGCCUUUGu -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 319595 | 0.66 | 0.999933 |
Target: 5'- cGGGAgcgUUCGcgagagaagcACGgCCugGGAGAUg -3' miRNA: 3'- uCCCUaa-AAGU----------UGCgGGugCCUUUGu -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 318694 | 1.1 | 0.023685 |
Target: 5'- cAGGGAUUUUCAACGCCCACGGAAACAg -3' miRNA: 3'- -UCCCUAAAAGUUGCGGGUGCCUUUGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 317254 | 0.67 | 0.999816 |
Target: 5'- cGGGAUccggacgUUCGAgcUGCCCGCgcgcuggaGGAAGCAc -3' miRNA: 3'- uCCCUAa------AAGUU--GCGGGUG--------CCUUUGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 309481 | 0.67 | 0.999875 |
Target: 5'- cGGGGAgcuggugacggUCGACGCCUugccCGGGAAg- -3' miRNA: 3'- -UCCCUaaa--------AGUUGCGGGu---GCCUUUgu -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 306974 | 0.66 | 0.999913 |
Target: 5'- cGGGAUgaugcuaGACGUCUACGGugGCu -3' miRNA: 3'- uCCCUAaaag---UUGCGGGUGCCuuUGu -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 301468 | 0.67 | 0.999887 |
Target: 5'- aAGGGAaaa-----GCCCAUGGAAGCc -3' miRNA: 3'- -UCCCUaaaaguugCGGGUGCCUUUGu -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 280932 | 0.67 | 0.999707 |
Target: 5'- gGGGGcccguGUUgaagCAGCGUCgGCGGggGCc -3' miRNA: 3'- -UCCC-----UAAaa--GUUGCGGgUGCCuuUGu -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 272738 | 0.67 | 0.999855 |
Target: 5'- uGGGAcuuuccuuUUUUUAGCGUCCAuCGGAGc-- -3' miRNA: 3'- uCCCU--------AAAAGUUGCGGGU-GCCUUugu -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 262102 | 0.74 | 0.957862 |
Target: 5'- cGGGAUgguuuaUUCGACGCCaagCACgGGAAGCAc -3' miRNA: 3'- uCCCUAa-----AAGUUGCGG---GUG-CCUUUGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 247221 | 1.1 | 0.023685 |
Target: 5'- cAGGGAUUUUCAACGCCCACGGAAACAg -3' miRNA: 3'- -UCCCUAAAAGUUGCGGGUGCCUUUGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 234929 | 0.68 | 0.999311 |
Target: 5'- cGGGAgaauaUggUGCCCGuCGGAAGCu -3' miRNA: 3'- uCCCUaaaa-GuuGCGGGU-GCCUUUGu -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 234750 | 0.7 | 0.997509 |
Target: 5'- uGGGAUcaUCccgGACgGCCC-CGGAAGCAu -3' miRNA: 3'- uCCCUAaaAG---UUG-CGGGuGCCUUUGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 226822 | 0.72 | 0.987942 |
Target: 5'- uGGGGAgagUCGAguccgGUCCACGGGAGCu -3' miRNA: 3'- -UCCCUaaaAGUUg----CGGGUGCCUUUGu -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 219050 | 0.68 | 0.999545 |
Target: 5'- gAGGGAgaaugCGGCGUgcuccgcggCCACGGAGaaGCAg -3' miRNA: 3'- -UCCCUaaaa-GUUGCG---------GGUGCCUU--UGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 208508 | 0.67 | 0.999707 |
Target: 5'- uGGGAgcagCAGCGaCgAUGGAAGCAg -3' miRNA: 3'- uCCCUaaaaGUUGCgGgUGCCUUUGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 208361 | 0.67 | 0.999707 |
Target: 5'- uGGGAgcagCAGCGaCgAUGGAAGCAg -3' miRNA: 3'- uCCCUaaaaGUUGCgGgUGCCUUUGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 207010 | 0.73 | 0.976257 |
Target: 5'- cGGGGGUccuUUUCGGgcgUGCCCGUGGAGACGu -3' miRNA: 3'- -UCCCUA---AAAGUU---GCGGGUGCCUUUGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 205176 | 0.67 | 0.999767 |
Target: 5'- gAGGGAUUgUCgGGCGCguguUCACGaGAGACGa -3' miRNA: 3'- -UCCCUAAaAG-UUGCG----GGUGC-CUUUGU- -5' |
|||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 202318 | 0.66 | 0.999933 |
Target: 5'- gGGGGAagaaCAGCGCCUgauCGG-AGCAg -3' miRNA: 3'- -UCCCUaaaaGUUGCGGGu--GCCuUUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home