Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10582 | 5' | -55.5 | NC_002687.1 | + | 143024 | 0.66 | 0.985439 |
Target: 5'- uGUUGCGCACGUcGAUgaaGCCCUcggGGGCAu -3' miRNA: 3'- -CAGCGUGUGCGaCUGg--UGGGA---CUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 107925 | 0.66 | 0.983723 |
Target: 5'- uUCGCaacGCACGCcaccgagaGCCACCUUGAugGg -3' miRNA: 3'- cAGCG---UGUGCGac------UGGUGGGACUugU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 220079 | 0.66 | 0.983723 |
Target: 5'- -cCGUaACGCGCUGACCuCCgUGGcCAa -3' miRNA: 3'- caGCG-UGUGCGACUGGuGGgACUuGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 240478 | 0.66 | 0.983723 |
Target: 5'- uUUGCAUGCGCUGcacggaucACCGaucuUCCUGAGCu -3' miRNA: 3'- cAGCGUGUGCGAC--------UGGU----GGGACUUGu -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 257696 | 0.66 | 0.983723 |
Target: 5'- aUCGCG-GCGCUGuCaGCCUUGAACGc -3' miRNA: 3'- cAGCGUgUGCGACuGgUGGGACUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 80458 | 0.66 | 0.981858 |
Target: 5'- -aCGCGCACG-UGACCACCggCUcGAugAa -3' miRNA: 3'- caGCGUGUGCgACUGGUGG--GA-CUugU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 300635 | 0.66 | 0.977653 |
Target: 5'- uGUCGCGCuCGCUucaaucguaGCCACCC-GAGCc -3' miRNA: 3'- -CAGCGUGuGCGAc--------UGGUGGGaCUUGu -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 13618 | 0.67 | 0.9753 |
Target: 5'- -aCGCACACGUUucccguugugucGAUuucgcuaacacuUACCCUGAACAc -3' miRNA: 3'- caGCGUGUGCGA------------CUG------------GUGGGACUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 253798 | 0.67 | 0.970059 |
Target: 5'- aUC-CugGCGCUGGCCcgaACCCUGuuggGCGa -3' miRNA: 3'- cAGcGugUGCGACUGG---UGGGACu---UGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 168789 | 0.67 | 0.964068 |
Target: 5'- gGUCGCGCGCGCaaACgAUCCcgGGACGg -3' miRNA: 3'- -CAGCGUGUGCGacUGgUGGGa-CUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 142409 | 0.67 | 0.960778 |
Target: 5'- aUUGC-CACGCUGA--GCCCUGuACAa -3' miRNA: 3'- cAGCGuGUGCGACUggUGGGACuUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 309145 | 0.68 | 0.953585 |
Target: 5'- cGUC-CAcCACGCUcACgACCCUGAGCc -3' miRNA: 3'- -CAGcGU-GUGCGAcUGgUGGGACUUGu -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 204535 | 0.68 | 0.952047 |
Target: 5'- -cCGCcccCGCGCUGAUaugcgacccgaggGCCCUGAACAu -3' miRNA: 3'- caGCGu--GUGCGACUGg------------UGGGACUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 77637 | 0.68 | 0.952047 |
Target: 5'- uUCGCGCACGUcuuguUGACCAaugacgacgacgaCUUGAGCGc -3' miRNA: 3'- cAGCGUGUGCG-----ACUGGUg------------GGACUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 271190 | 0.68 | 0.949676 |
Target: 5'- -cCGCGCACuCuUGGCCagaGCUCUGAACAu -3' miRNA: 3'- caGCGUGUGcG-ACUGG---UGGGACUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 155747 | 0.68 | 0.945553 |
Target: 5'- aUCGCGCGCGCgucUGGCgaACCCcuauaaaaaUGAACAc -3' miRNA: 3'- cAGCGUGUGCG---ACUGg-UGGG---------ACUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 39371 | 0.68 | 0.940768 |
Target: 5'- --aGCAUcaGCGCUGuuuuuccGCCGCCCUGGAa- -3' miRNA: 3'- cagCGUG--UGCGAC-------UGGUGGGACUUgu -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 206385 | 0.69 | 0.936658 |
Target: 5'- -aCGUAUACGagccaUGACUACCCUucGGACAc -3' miRNA: 3'- caGCGUGUGCg----ACUGGUGGGA--CUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 182436 | 0.69 | 0.926887 |
Target: 5'- --aGCGgGCGC-GACCGCCgaGGACAu -3' miRNA: 3'- cagCGUgUGCGaCUGGUGGgaCUUGU- -5' |
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10582 | 5' | -55.5 | NC_002687.1 | + | 85494 | 0.69 | 0.921672 |
Target: 5'- --gGUGCACGC-GGCCuCCCUGGACc -3' miRNA: 3'- cagCGUGUGCGaCUGGuGGGACUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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