miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 308422 0.71 0.961376
Target:  5'- cCCGGCGAccccgGCGggGCGGGCGCGCCc--- -3'
miRNA:   3'- uGGCUGUU-----UGC--UGCCUGUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 116083 0.71 0.970656
Target:  5'- cGCCGugAuGAUGACaaguGGACACGCC-UUGu -3'
miRNA:   3'- -UGGCugU-UUGCUG----CCUGUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 100889 0.71 0.973359
Target:  5'- gAUCGACAGACGugGcGccACugGCCAa-- -3'
miRNA:   3'- -UGGCUGUUUGCugC-C--UGugCGGUaac -5'
10592 5' -52 NC_002687.1 + 227005 0.7 0.978218
Target:  5'- cGCCGACGaggacGACGACGGAgCGgcuuCGCCuggUGg -3'
miRNA:   3'- -UGGCUGU-----UUGCUGCCU-GU----GCGGua-AC- -5'
10592 5' -52 NC_002687.1 + 227295 0.7 0.978218
Target:  5'- aGCCGACGGAgcCGACgGGGCgACGCCc--- -3'
miRNA:   3'- -UGGCUGUUU--GCUG-CCUG-UGCGGuaac -5'
10592 5' -52 NC_002687.1 + 69312 0.7 0.980176
Target:  5'- cACgCGACAGACGAgGGugACgguuucgGUCAUUGa -3'
miRNA:   3'- -UG-GCUGUUUGCUgCCugUG-------CGGUAAC- -5'
10592 5' -52 NC_002687.1 + 254015 0.7 0.980385
Target:  5'- uCCGcCGAACGAUGGAgACGCacucCGUUGu -3'
miRNA:   3'- uGGCuGUUUGCUGCCUgUGCG----GUAAC- -5'
10592 5' -52 NC_002687.1 + 5026 0.7 0.980385
Target:  5'- cACCGACAGucacgcagauCGACaaGGACACGUCuUUGa -3'
miRNA:   3'- -UGGCUGUUu---------GCUG--CCUGUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 296290 0.7 0.982388
Target:  5'- gAUCGACGcuACGACGG--GCGUCGUUGg -3'
miRNA:   3'- -UGGCUGUu-UGCUGCCugUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 30414 0.7 0.982388
Target:  5'- aGCCGGCcuACGAggaggUGGACuACGCCAa-- -3'
miRNA:   3'- -UGGCUGuuUGCU-----GCCUG-UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 255337 0.7 0.982388
Target:  5'- aGCCGAC--ACGAUGGcGCAgGCCAg-- -3'
miRNA:   3'- -UGGCUGuuUGCUGCC-UGUgCGGUaac -5'
10592 5' -52 NC_002687.1 + 321907 0.7 0.985927
Target:  5'- gACCGACAGAuCGACcaACGCGCUAa-- -3'
miRNA:   3'- -UGGCUGUUU-GCUGccUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 79612 0.69 0.990182
Target:  5'- gGCCGACG--UGACGcGCACGUCGUa- -3'
miRNA:   3'- -UGGCUGUuuGCUGCcUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 307816 0.69 0.990182
Target:  5'- cACUGAUggGGACGGCGGugACGgCggUGa -3'
miRNA:   3'- -UGGCUG--UUUGCUGCCugUGCgGuaAC- -5'
10592 5' -52 NC_002687.1 + 224134 0.68 0.993356
Target:  5'- cGCUGGCGGugG-CGGugGCGCUg--- -3'
miRNA:   3'- -UGGCUGUUugCuGCCugUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 200548 0.68 0.993356
Target:  5'- aGCCGACGucGACGcucggGCGGAagacggcauCACGCCuUUGa -3'
miRNA:   3'- -UGGCUGU--UUGC-----UGCCU---------GUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 169462 0.68 0.993356
Target:  5'- aGCUGACcGAuCGuCGaGACGCGCCGUUc -3'
miRNA:   3'- -UGGCUGuUU-GCuGC-CUGUGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 306499 0.68 0.993356
Target:  5'- cACCGACAacAACGAgaaggcauuUGGACAC-CUGUUGg -3'
miRNA:   3'- -UGGCUGU--UUGCU---------GCCUGUGcGGUAAC- -5'
10592 5' -52 NC_002687.1 + 224095 0.68 0.993962
Target:  5'- uGCUGGCGGACGuucgggacgcggugGCGGugGCGCUg--- -3'
miRNA:   3'- -UGGCUGUUUGC--------------UGCCugUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 40056 0.68 0.994127
Target:  5'- cGCCGACAGgacAUGGCgucgccgGGGCugGCUcgUGa -3'
miRNA:   3'- -UGGCUGUU---UGCUG-------CCUGugCGGuaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.