miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 325177 1.08 0.020024
Target:  5'- cACCGACAAACGACGGACACGCCAUUGc -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 324809 0.99 0.062611
Target:  5'- cACCGACAAACGACGGGCACGCCAc-- -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 324042 0.99 0.062611
Target:  5'- cACCGACAAACGACGGGCACGCCAc-- -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 323658 0.99 0.062611
Target:  5'- cACCGACAAACGACGGGCACGCCAc-- -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 324425 0.99 0.062611
Target:  5'- cACCGACAAACGACGGGCACGCCAc-- -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 200116 0.88 0.285487
Target:  5'- uGCCGGC-GACGACGGccGCGCGCCGUUGa -3'
miRNA:   3'- -UGGCUGuUUGCUGCC--UGUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 205445 0.76 0.817514
Target:  5'- aACUGGCGGuguCGugGGACACGCUGUg- -3'
miRNA:   3'- -UGGCUGUUu--GCugCCUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 74175 0.76 0.817514
Target:  5'- --gGGCAAAcucgcCGGCGGACugGCCGUUGu -3'
miRNA:   3'- uggCUGUUU-----GCUGCCUGugCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 256216 0.75 0.857325
Target:  5'- uGCCGACAcgggugcgcaGGCGACGGuCACGCUg--- -3'
miRNA:   3'- -UGGCUGU----------UUGCUGCCuGUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 158808 0.75 0.871949
Target:  5'- -gCGGCGAcaACGACGGAC-CGCCGUc- -3'
miRNA:   3'- ugGCUGUU--UGCUGCCUGuGCGGUAac -5'
10592 5' -52 NC_002687.1 + 159177 0.75 0.871949
Target:  5'- gACCGGCGgcGACGGCGGuC-CGUCGUUGu -3'
miRNA:   3'- -UGGCUGU--UUGCUGCCuGuGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 71701 0.74 0.885762
Target:  5'- gGCCGugGAACcACGGACACuagGCCGggGg -3'
miRNA:   3'- -UGGCugUUUGcUGCCUGUG---CGGUaaC- -5'
10592 5' -52 NC_002687.1 + 241812 0.74 0.892353
Target:  5'- aGCUGGCGgaauucuuGGCGACGGuGCACGCCGa-- -3'
miRNA:   3'- -UGGCUGU--------UUGCUGCC-UGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 307717 0.74 0.892353
Target:  5'- cGCCGAC-AGCGAUGGugACGgCAUc- -3'
miRNA:   3'- -UGGCUGuUUGCUGCCugUGCgGUAac -5'
10592 5' -52 NC_002687.1 + 3663 0.72 0.946517
Target:  5'- gGCCGACGugucggugaguacuGACGAUGGACAcaccgcacuacacuuCGCCAUc- -3'
miRNA:   3'- -UGGCUGU--------------UUGCUGCCUGU---------------GCGGUAac -5'
10592 5' -52 NC_002687.1 + 157265 0.72 0.950237
Target:  5'- uACCGAUGAgcGCGACGGgaaGCGCCGa-- -3'
miRNA:   3'- -UGGCUGUU--UGCUGCCug-UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 262378 0.72 0.950237
Target:  5'- uACgCGACGAACGGCGGACGCuacCCucucUUGa -3'
miRNA:   3'- -UG-GCUGUUUGCUGCCUGUGc--GGu---AAC- -5'
10592 5' -52 NC_002687.1 + 111592 0.72 0.950237
Target:  5'- cGCCGACGAACGACGuua--GCCAUUu -3'
miRNA:   3'- -UGGCUGUUUGCUGCcugugCGGUAAc -5'
10592 5' -52 NC_002687.1 + 22544 0.72 0.954164
Target:  5'- aGCCGuACAuaaugcGCGACGGACACuGCCu--- -3'
miRNA:   3'- -UGGC-UGUu-----UGCUGCCUGUG-CGGuaac -5'
10592 5' -52 NC_002687.1 + 238670 0.72 0.957875
Target:  5'- cGCCGACAAGCGuCGGGCcgagaucggaGCCAg-- -3'
miRNA:   3'- -UGGCUGUUUGCuGCCUGug--------CGGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.