miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 325177 1.08 0.020024
Target:  5'- cACCGACAAACGACGGACACGCCAUUGc -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 321907 0.7 0.985927
Target:  5'- gACCGACAGAuCGACcaACGCGCUAa-- -3'
miRNA:   3'- -UGGCUGUUU-GCUGccUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 224134 0.68 0.993356
Target:  5'- cGCUGGCGGugG-CGGugGCGCUg--- -3'
miRNA:   3'- -UGGCUGUUugCuGCCugUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 322852 0.66 0.999338
Target:  5'- gAUCGACgGAGCGACGGcUGCGCgAUc- -3'
miRNA:   3'- -UGGCUG-UUUGCUGCCuGUGCGgUAac -5'
10592 5' -52 NC_002687.1 + 324809 0.99 0.062611
Target:  5'- cACCGACAAACGACGGGCACGCCAc-- -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 200116 0.88 0.285487
Target:  5'- uGCCGGC-GACGACGGccGCGCGCCGUUGa -3'
miRNA:   3'- -UGGCUGuUUGCUGCC--UGUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 158808 0.75 0.871949
Target:  5'- -gCGGCGAcaACGACGGAC-CGCCGUc- -3'
miRNA:   3'- ugGCUGUU--UGCUGCCUGuGCGGUAac -5'
10592 5' -52 NC_002687.1 + 157265 0.72 0.950237
Target:  5'- uACCGAUGAgcGCGACGGgaaGCGCCGa-- -3'
miRNA:   3'- -UGGCUGUU--UGCUGCCug-UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 116083 0.71 0.970656
Target:  5'- cGCCGugAuGAUGACaaguGGACACGCC-UUGu -3'
miRNA:   3'- -UGGCugU-UUGCUG----CCUGUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 296290 0.7 0.982388
Target:  5'- gAUCGACGcuACGACGG--GCGUCGUUGg -3'
miRNA:   3'- -UGGCUGUu-UGCUGCCugUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 69312 0.7 0.980176
Target:  5'- cACgCGACAGACGAgGGugACgguuucgGUCAUUGa -3'
miRNA:   3'- -UG-GCUGUUUGCUgCCugUG-------CGGUAAC- -5'
10592 5' -52 NC_002687.1 + 308422 0.71 0.961376
Target:  5'- cCCGGCGAccccgGCGggGCGGGCGCGCCc--- -3'
miRNA:   3'- uGGCUGUU-----UGC--UGCCUGUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 323658 0.99 0.062611
Target:  5'- cACCGACAAACGACGGGCACGCCAc-- -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 254015 0.7 0.980385
Target:  5'- uCCGcCGAACGAUGGAgACGCacucCGUUGu -3'
miRNA:   3'- uGGCuGUUUGCUGCCUgUGCG----GUAAC- -5'
10592 5' -52 NC_002687.1 + 324042 0.99 0.062611
Target:  5'- cACCGACAAACGACGGGCACGCCAc-- -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 111592 0.72 0.950237
Target:  5'- cGCCGACGAACGACGuua--GCCAUUu -3'
miRNA:   3'- -UGGCUGUUUGCUGCcugugCGGUAAc -5'
10592 5' -52 NC_002687.1 + 255337 0.7 0.982388
Target:  5'- aGCCGAC--ACGAUGGcGCAgGCCAg-- -3'
miRNA:   3'- -UGGCUGuuUGCUGCC-UGUgCGGUaac -5'
10592 5' -52 NC_002687.1 + 200548 0.68 0.993356
Target:  5'- aGCCGACGucGACGcucggGCGGAagacggcauCACGCCuUUGa -3'
miRNA:   3'- -UGGCUGU--UUGC-----UGCCU---------GUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 324425 0.99 0.062611
Target:  5'- cACCGACAAACGACGGGCACGCCAc-- -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 256216 0.75 0.857325
Target:  5'- uGCCGACAcgggugcgcaGGCGACGGuCACGCUg--- -3'
miRNA:   3'- -UGGCUGU----------UUGCUGCCuGUGCGGuaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.