miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 2393 0.66 0.998829
Target:  5'- -gCGACGAACGuaGCGGACgACGCg---- -3'
miRNA:   3'- ugGCUGUUUGC--UGCCUG-UGCGguaac -5'
10592 5' -52 NC_002687.1 + 3663 0.72 0.946517
Target:  5'- gGCCGACGugucggugaguacuGACGAUGGACAcaccgcacuacacuuCGCCAUc- -3'
miRNA:   3'- -UGGCUGU--------------UUGCUGCCUGU---------------GCGGUAac -5'
10592 5' -52 NC_002687.1 + 5026 0.7 0.980385
Target:  5'- cACCGACAGucacgcagauCGACaaGGACACGUCuUUGa -3'
miRNA:   3'- -UGGCUGUUu---------GCUG--CCUGUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 8865 0.68 0.994208
Target:  5'- uCCGgaaGCGuucGCGGCGGAC-CGCCGUa- -3'
miRNA:   3'- uGGC---UGUu--UGCUGCCUGuGCGGUAac -5'
10592 5' -52 NC_002687.1 + 9892 0.66 0.999026
Target:  5'- cACUGACGccgGACuuGACGGAUGCGUggcgCAUUGg -3'
miRNA:   3'- -UGGCUGU---UUG--CUGCCUGUGCG----GUAAC- -5'
10592 5' -52 NC_002687.1 + 11340 0.67 0.998329
Target:  5'- --gGACAGACG-CGGuACGCGCUAg-- -3'
miRNA:   3'- uggCUGUUUGCuGCC-UGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 18333 0.67 0.998329
Target:  5'- gGCgGGCGguGAUGACaGugACGCCGUg- -3'
miRNA:   3'- -UGgCUGU--UUGCUGcCugUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 18486 0.68 0.995649
Target:  5'- -gUGugAAACGGCGGACGaGCUAUa- -3'
miRNA:   3'- ugGCugUUUGCUGCCUGUgCGGUAac -5'
10592 5' -52 NC_002687.1 + 22123 0.66 0.999338
Target:  5'- cACCaGgAggUGGCGGACGCGCUc--- -3'
miRNA:   3'- -UGGcUgUuuGCUGCCUGUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 22544 0.72 0.954164
Target:  5'- aGCCGuACAuaaugcGCGACGGACACuGCCu--- -3'
miRNA:   3'- -UGGC-UGUu-----UGCUGCCUGUG-CGGuaac -5'
10592 5' -52 NC_002687.1 + 30414 0.7 0.982388
Target:  5'- aGCCGGCcuACGAggaggUGGACuACGCCAa-- -3'
miRNA:   3'- -UGGCUGuuUGCU-----GCCUG-UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 33559 0.66 0.999026
Target:  5'- uGCCaACGAGuaccuuuuCGugGGGCACGCUGUa- -3'
miRNA:   3'- -UGGcUGUUU--------GCugCCUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 37258 0.66 0.998829
Target:  5'- uGCCGGCc-ACGACGGgGCGCGUUg--- -3'
miRNA:   3'- -UGGCUGuuUGCUGCC-UGUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 39145 0.68 0.995649
Target:  5'- cGCCGGCuGugGGCaGGACGagguaGUCGUUGu -3'
miRNA:   3'- -UGGCUGuUugCUG-CCUGUg----CGGUAAC- -5'
10592 5' -52 NC_002687.1 + 40056 0.68 0.994127
Target:  5'- cGCCGACAGgacAUGGCgucgccgGGGCugGCUcgUGa -3'
miRNA:   3'- -UGGCUGUU---UGCUG-------CCUGugCGGuaAC- -5'
10592 5' -52 NC_002687.1 + 49782 0.66 0.999195
Target:  5'- cACCGucCGAAUGACGcagacauuuGACACGUCAUc- -3'
miRNA:   3'- -UGGCu-GUUUGCUGC---------CUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 50668 0.66 0.999195
Target:  5'- cACCGucCGAAUGACGcagacauuuGACACGUCAUc- -3'
miRNA:   3'- -UGGCu-GUUUGCUGC---------CUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 51653 0.66 0.999195
Target:  5'- cACCGucCGAAUGACGcagacauuuGACACGUCAUc- -3'
miRNA:   3'- -UGGCu-GUUUGCUGC---------CUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 58244 0.66 0.999195
Target:  5'- cACCGACGAuggcgucaGCGACGGGuucgaucaACGUCAa-- -3'
miRNA:   3'- -UGGCUGUU--------UGCUGCCUg-------UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 61441 0.68 0.995649
Target:  5'- gAUCGGCAGcACGGacguggagacCGGACGCGUCGUg- -3'
miRNA:   3'- -UGGCUGUU-UGCU----------GCCUGUGCGGUAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.