miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10593 5' -55.7 NC_002687.1 + 295879 0.66 0.981298
Target:  5'- gGCAUCACCgcguucgUGUACgACCagcUGCGGc- -3'
miRNA:   3'- -CGUGGUGGa------ACGUGgUGGa--ACGCCau -5'
10593 5' -55.7 NC_002687.1 + 99886 0.66 0.981098
Target:  5'- -gACCGCCUUGUuucccuuuucacaGCCACCUUcGCcucucacaaGGUAc -3'
miRNA:   3'- cgUGGUGGAACG-------------UGGUGGAA-CG---------CCAU- -5'
10593 5' -55.7 NC_002687.1 + 80016 0.66 0.979219
Target:  5'- uCACCACCaaggucUUGCGCCACC--GCGa-- -3'
miRNA:   3'- cGUGGUGG------AACGUGGUGGaaCGCcau -5'
10593 5' -55.7 NC_002687.1 + 332033 0.66 0.979219
Target:  5'- uGCAggcUgGCCaUGCGCCGCCUUGaGGa- -3'
miRNA:   3'- -CGU---GgUGGaACGUGGUGGAACgCCau -5'
10593 5' -55.7 NC_002687.1 + 296956 0.66 0.976973
Target:  5'- uCAuCCGCC-UGCugCACCggGgGGUGa -3'
miRNA:   3'- cGU-GGUGGaACGugGUGGaaCgCCAU- -5'
10593 5' -55.7 NC_002687.1 + 253087 0.66 0.976739
Target:  5'- uCACCGCCgcacaCGCCGCCUUgaagagcGCGGa- -3'
miRNA:   3'- cGUGGUGGaac--GUGGUGGAA-------CGCCau -5'
10593 5' -55.7 NC_002687.1 + 64879 0.66 0.974554
Target:  5'- gGCAcacCCACaucaUGCACCGCUUUGCGu-- -3'
miRNA:   3'- -CGU---GGUGga--ACGUGGUGGAACGCcau -5'
10593 5' -55.7 NC_002687.1 + 203452 0.66 0.971955
Target:  5'- uGCACCACCUcGUacccGCCGCCguaacUUGCGu-- -3'
miRNA:   3'- -CGUGGUGGAaCG----UGGUGG-----AACGCcau -5'
10593 5' -55.7 NC_002687.1 + 234150 0.66 0.971955
Target:  5'- -gGCCGCUUUggcacGCGCUGCCUcGCGGg- -3'
miRNA:   3'- cgUGGUGGAA-----CGUGGUGGAaCGCCau -5'
10593 5' -55.7 NC_002687.1 + 225223 0.66 0.96917
Target:  5'- cGUGCCgACCgugccgGCGCCGCCgcgucgGCGGc- -3'
miRNA:   3'- -CGUGG-UGGaa----CGUGGUGGaa----CGCCau -5'
10593 5' -55.7 NC_002687.1 + 159689 0.67 0.959643
Target:  5'- aGCugCACCUUuuucauggaccGCAUCACCUUGuuGa- -3'
miRNA:   3'- -CGugGUGGAA-----------CGUGGUGGAACgcCau -5'
10593 5' -55.7 NC_002687.1 + 135263 0.67 0.959643
Target:  5'- -aACCGC--UGCACCGCgUcGCGGUAc -3'
miRNA:   3'- cgUGGUGgaACGUGGUGgAaCGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 146551 0.67 0.952269
Target:  5'- -gGCCACUUgagcgcggGCugCACCUgGCGGa- -3'
miRNA:   3'- cgUGGUGGAa-------CGugGUGGAaCGCCau -5'
10593 5' -55.7 NC_002687.1 + 159527 0.68 0.948263
Target:  5'- --cCCGCCgagugGCugCGCCUgGCGGUu -3'
miRNA:   3'- cguGGUGGaa---CGugGUGGAaCGCCAu -5'
10593 5' -55.7 NC_002687.1 + 102807 0.68 0.94404
Target:  5'- uGCugCGCCUgucucUGCugCAUCUgcUGCuGGUGc -3'
miRNA:   3'- -CGugGUGGA-----ACGugGUGGA--ACG-CCAU- -5'
10593 5' -55.7 NC_002687.1 + 81295 0.68 0.939599
Target:  5'- uGCAUCGCUUUGCGCCAUagCUUuaGGa- -3'
miRNA:   3'- -CGUGGUGGAACGUGGUG--GAAcgCCau -5'
10593 5' -55.7 NC_002687.1 + 291662 0.68 0.939599
Target:  5'- cGCgGCCGCUggGCACCGCgCgagguaaGCGGUGa -3'
miRNA:   3'- -CG-UGGUGGaaCGUGGUG-Gaa-----CGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 107915 0.69 0.914064
Target:  5'- aCGCCACCgagaGCCACCUUGaUGGg- -3'
miRNA:   3'- cGUGGUGGaacgUGGUGGAAC-GCCau -5'
10593 5' -55.7 NC_002687.1 + 89366 0.69 0.914064
Target:  5'- -aACuCugUUUGCACC-UCUUGCGGUGu -3'
miRNA:   3'- cgUG-GugGAACGUGGuGGAACGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 303323 0.69 0.912355
Target:  5'- uGCACUugCUUGCAUUACCcgagggguugcacgUggGCGGUGc -3'
miRNA:   3'- -CGUGGugGAACGUGGUGG--------------Aa-CGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.