miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10594 3' -55.4 NC_002687.1 + 27987 0.66 0.989815
Target:  5'- uUCACGGccCUCACCaucaacacggaACGAUCCAUACu -3'
miRNA:   3'- -GGUGUCc-GAGUGGg----------UGCUAGGUGUGu -5'
10594 3' -55.4 NC_002687.1 + 282120 0.66 0.98852
Target:  5'- aCCGCagggagAGGCUCACCUugGAuggaaguagggUCUGCGg- -3'
miRNA:   3'- -GGUG------UCCGAGUGGGugCU-----------AGGUGUgu -5'
10594 3' -55.4 NC_002687.1 + 40285 0.66 0.98852
Target:  5'- aCCACAGuuucauccGCUC-CCCACcgcagaagaaGAUCCAC-CAu -3'
miRNA:   3'- -GGUGUC--------CGAGuGGGUG----------CUAGGUGuGU- -5'
10594 3' -55.4 NC_002687.1 + 224861 0.66 0.98852
Target:  5'- aCGC-GGCggCGCCggCACGGUCgGCACGc -3'
miRNA:   3'- gGUGuCCGa-GUGG--GUGCUAGgUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 262265 0.66 0.98852
Target:  5'- aCACAuuGGCagCACCguUGAUCCACGa- -3'
miRNA:   3'- gGUGU--CCGa-GUGGguGCUAGGUGUgu -5'
10594 3' -55.4 NC_002687.1 + 54981 0.66 0.9871
Target:  5'- uCCACccaGCUCAUCUcuACGAUgcaCCGCACAc -3'
miRNA:   3'- -GGUGuc-CGAGUGGG--UGCUA---GGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 121495 0.66 0.985548
Target:  5'- uCCGaGGGUUC-CgCCACGggCCACGCc -3'
miRNA:   3'- -GGUgUCCGAGuG-GGUGCuaGGUGUGu -5'
10594 3' -55.4 NC_002687.1 + 199837 0.66 0.983858
Target:  5'- gCCACGGGUguuUCACCCcCuuuUCCAUugAu -3'
miRNA:   3'- -GGUGUCCG---AGUGGGuGcu-AGGUGugU- -5'
10594 3' -55.4 NC_002687.1 + 217094 0.66 0.983858
Target:  5'- cCCACgAGuGCUCcggcuCCCACGAgugcUCC-CACGa -3'
miRNA:   3'- -GGUG-UC-CGAGu----GGGUGCU----AGGuGUGU- -5'
10594 3' -55.4 NC_002687.1 + 210234 0.66 0.983858
Target:  5'- aCCACGGGCa---CCACGGgcaCCACAg- -3'
miRNA:   3'- -GGUGUCCGagugGGUGCUa--GGUGUgu -5'
10594 3' -55.4 NC_002687.1 + 311654 0.66 0.982023
Target:  5'- cCCACAGGaacgauUUGCCgGCG-UUCACGCAg -3'
miRNA:   3'- -GGUGUCCg-----AGUGGgUGCuAGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 325471 0.67 0.980034
Target:  5'- aCCACAGGagugUCGgCCACGAcgaACGCAa -3'
miRNA:   3'- -GGUGUCCg---AGUgGGUGCUaggUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 198802 0.67 0.980034
Target:  5'- aCCACuGGCcuagcaCGCCCGCGAUCUccucCAUg -3'
miRNA:   3'- -GGUGuCCGa-----GUGGGUGCUAGGu---GUGu -5'
10594 3' -55.4 NC_002687.1 + 39042 0.67 0.977887
Target:  5'- cCCGCgaAGGCcacgcucaugUCGCCCGCGAgCUGCugAa -3'
miRNA:   3'- -GGUG--UCCG----------AGUGGGUGCUaGGUGugU- -5'
10594 3' -55.4 NC_002687.1 + 209318 0.67 0.975574
Target:  5'- gCCGCGGGa-UACCCuguUGAUCCGgACGa -3'
miRNA:   3'- -GGUGUCCgaGUGGGu--GCUAGGUgUGU- -5'
10594 3' -55.4 NC_002687.1 + 153245 0.67 0.975574
Target:  5'- gUCGCGGGUUCGauucucCCCGCG-UCCACu-- -3'
miRNA:   3'- -GGUGUCCGAGU------GGGUGCuAGGUGugu -5'
10594 3' -55.4 NC_002687.1 + 155286 0.67 0.973089
Target:  5'- aCCAUAuGGCUCGuuCAaGAUUUACACAa -3'
miRNA:   3'- -GGUGU-CCGAGUggGUgCUAGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 298441 0.67 0.973089
Target:  5'- aCAC-GGCgaaCACCC-CGGUCCaaGCACGc -3'
miRNA:   3'- gGUGuCCGa--GUGGGuGCUAGG--UGUGU- -5'
10594 3' -55.4 NC_002687.1 + 211870 0.68 0.967579
Target:  5'- gCuuGGGCUCGUCCACG--CCGCACAc -3'
miRNA:   3'- gGugUCCGAGUGGGUGCuaGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 154527 0.68 0.961313
Target:  5'- uCCucucCGGGUuccaUCACCaUugGAUCCGCACu -3'
miRNA:   3'- -GGu---GUCCG----AGUGG-GugCUAGGUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.