Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10594 | 3' | -55.4 | NC_002687.1 | + | 4026 | 0.74 | 0.743005 |
Target: 5'- cCCACGGGC--ACCCGUGAUCaCGCACGu -3' miRNA: 3'- -GGUGUCCGagUGGGUGCUAG-GUGUGU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 10801 | 0.68 | 0.961313 |
Target: 5'- uCCuu-GGCUCGCCCGuccCGGUgCCACAUu -3' miRNA: 3'- -GGuguCCGAGUGGGU---GCUA-GGUGUGu -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 22209 | 0.68 | 0.957886 |
Target: 5'- uCCACAGGUUCcCCCGCcgccagcguGUgCGCACGa -3' miRNA: 3'- -GGUGUCCGAGuGGGUGc--------UAgGUGUGU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 27987 | 0.66 | 0.989815 |
Target: 5'- uUCACGGccCUCACCaucaacacggaACGAUCCAUACu -3' miRNA: 3'- -GGUGUCc-GAGUGGg----------UGCUAGGUGUGu -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 39042 | 0.67 | 0.977887 |
Target: 5'- cCCGCgaAGGCcacgcucaugUCGCCCGCGAgCUGCugAa -3' miRNA: 3'- -GGUG--UCCG----------AGUGGGUGCUaGGUGugU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 40285 | 0.66 | 0.98852 |
Target: 5'- aCCACAGuuucauccGCUC-CCCACcgcagaagaaGAUCCAC-CAu -3' miRNA: 3'- -GGUGUC--------CGAGuGGGUG----------CUAGGUGuGU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 41197 | 0.73 | 0.805057 |
Target: 5'- gCGCGGGCacuugUACCCACGGUUUACAgAg -3' miRNA: 3'- gGUGUCCGa----GUGGGUGCUAGGUGUgU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 45347 | 0.71 | 0.860209 |
Target: 5'- cCUugGGGCUCuucucCCCcUGGUCCGCGCc -3' miRNA: 3'- -GGugUCCGAGu----GGGuGCUAGGUGUGu -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 54981 | 0.66 | 0.9871 |
Target: 5'- uCCACccaGCUCAUCUcuACGAUgcaCCGCACAc -3' miRNA: 3'- -GGUGuc-CGAGUGGG--UGCUA---GGUGUGU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 62056 | 0.69 | 0.94212 |
Target: 5'- -aACAGGCgccgcgugaUCAUCCGCGAUCCuauCAUc -3' miRNA: 3'- ggUGUCCG---------AGUGGGUGCUAGGu--GUGu -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 63386 | 0.7 | 0.922952 |
Target: 5'- cUCGCAGGCUacCACCCgucggcguGCGAgaucCCAUACGc -3' miRNA: 3'- -GGUGUCCGA--GUGGG--------UGCUa---GGUGUGU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 94652 | 0.69 | 0.932968 |
Target: 5'- uCCACcGGCUCGaCCugGcgCuCACGCAa -3' miRNA: 3'- -GGUGuCCGAGUgGGugCuaG-GUGUGU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 110472 | 0.69 | 0.932968 |
Target: 5'- uCCuuGGGuCUCACCCGgGAgaugUUCACACGa -3' miRNA: 3'- -GGugUCC-GAGUGGGUgCU----AGGUGUGU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 121495 | 0.66 | 0.985548 |
Target: 5'- uCCGaGGGUUC-CgCCACGggCCACGCc -3' miRNA: 3'- -GGUgUCCGAGuG-GGUGCuaGGUGUGu -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 144152 | 0.68 | 0.953505 |
Target: 5'- cUCGCGGGCUCuCUCACGAgaaccuggguaCAUACAa -3' miRNA: 3'- -GGUGUCCGAGuGGGUGCUag---------GUGUGU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 153245 | 0.67 | 0.975574 |
Target: 5'- gUCGCGGGUUCGauucucCCCGCG-UCCACu-- -3' miRNA: 3'- -GGUGUCCGAGU------GGGUGCuAGGUGugu -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 154527 | 0.68 | 0.961313 |
Target: 5'- uCCucucCGGGUuccaUCACCaUugGAUCCGCACu -3' miRNA: 3'- -GGu---GUCCG----AGUGG-GugCUAGGUGUGu -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 155286 | 0.67 | 0.973089 |
Target: 5'- aCCAUAuGGCUCGuuCAaGAUUUACACAa -3' miRNA: 3'- -GGUGU-CCGAGUggGUgCUAGGUGUGU- -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 198543 | 0.71 | 0.881173 |
Target: 5'- aCCACGGGCUgaCGCaCgGCGAUuuGCACc -3' miRNA: 3'- -GGUGUCCGA--GUG-GgUGCUAggUGUGu -5' |
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10594 | 3' | -55.4 | NC_002687.1 | + | 198802 | 0.67 | 0.980034 |
Target: 5'- aCCACuGGCcuagcaCGCCCGCGAUCUccucCAUg -3' miRNA: 3'- -GGUGuCCGa-----GUGGGUGCUAGGu---GUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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