miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10596 3' -64 NC_002687.1 + 331900 1.05 0.0021
Target:  5'- cUCCACGCCCAAGCGCCGCCGCCGCAAu -3'
miRNA:   3'- -AGGUGCGGGUUCGCGGCGGCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 315816 0.87 0.040395
Target:  5'- uUCCGcCGCgCCGGGUGCCGCCGCCGCAc -3'
miRNA:   3'- -AGGU-GCG-GGUUCGCGGCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 17643 0.76 0.21222
Target:  5'- gUCCGC-UCCAAGCGuuGCgGCCGCAGc -3'
miRNA:   3'- -AGGUGcGGGUUCGCggCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 298042 0.76 0.232093
Target:  5'- --aGCGCCCAAuugauaaggccGCgGCCGCCGCCGCGc -3'
miRNA:   3'- aggUGCGGGUU-----------CG-CGGCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 224825 0.75 0.2373
Target:  5'- -gCugGCCaCGAGCuGCCGCUGCCGCu- -3'
miRNA:   3'- agGugCGG-GUUCG-CGGCGGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 282531 0.75 0.248008
Target:  5'- gCCGcCGCCgCAGGCccuacucccgccGCUGCCGCCGCAGa -3'
miRNA:   3'- aGGU-GCGG-GUUCG------------CGGCGGCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 292423 0.73 0.314129
Target:  5'- aCaauCGCCCGuGCGCCGCgGCCGCc- -3'
miRNA:   3'- aGgu-GCGGGUuCGCGGCGgCGGCGuu -5'
10596 3' -64 NC_002687.1 + 139128 0.72 0.392753
Target:  5'- cUCCAUGCCCAAGC-CUGUCGacccgaCGCGAu -3'
miRNA:   3'- -AGGUGCGGGUUCGcGGCGGCg-----GCGUU- -5'
10596 3' -64 NC_002687.1 + 45323 0.72 0.400508
Target:  5'- -aCGCGCCCaAAGCGUCGaCCGUCGUc- -3'
miRNA:   3'- agGUGCGGG-UUCGCGGC-GGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 254738 0.71 0.424347
Target:  5'- cUCaaaAUGCCCAGGuUGCCGUgGCUGCGAg -3'
miRNA:   3'- -AGg--UGCGGGUUC-GCGGCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 49332 0.71 0.43248
Target:  5'- cUCACGCCC--GCGCaCGCCGCCaCAu -3'
miRNA:   3'- aGGUGCGGGuuCGCG-GCGGCGGcGUu -5'
10596 3' -64 NC_002687.1 + 17534 0.7 0.457411
Target:  5'- -aCAC-UCCAAGCGuuGCgGCCGCAGc -3'
miRNA:   3'- agGUGcGGGUUCGCggCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 283553 0.7 0.457411
Target:  5'- gCCGCGCCU-GGUGCUGCCGCCc--- -3'
miRNA:   3'- aGGUGCGGGuUCGCGGCGGCGGcguu -5'
10596 3' -64 NC_002687.1 + 215183 0.7 0.465891
Target:  5'- uUCCGCGUCCuccGCGCCGgaagCGUCGCAc -3'
miRNA:   3'- -AGGUGCGGGuu-CGCGGCg---GCGGCGUu -5'
10596 3' -64 NC_002687.1 + 57496 0.7 0.474452
Target:  5'- cUCAUGgCCAucAGCGCCGCCGauGCAGc -3'
miRNA:   3'- aGGUGCgGGU--UCGCGGCGGCggCGUU- -5'
10596 3' -64 NC_002687.1 + 328467 0.7 0.491806
Target:  5'- uUCCAUGgCgAAGcCGUCGUCGCCGCu- -3'
miRNA:   3'- -AGGUGCgGgUUC-GCGGCGGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 22982 0.7 0.491806
Target:  5'- aCCGCGUCCcguGAGCGCCuccCCGUgGCGAa -3'
miRNA:   3'- aGGUGCGGG---UUCGCGGc--GGCGgCGUU- -5'
10596 3' -64 NC_002687.1 + 202229 0.7 0.504126
Target:  5'- gCCcCGCCCGAGCGCgcgUgagccacugugccaaGCCGCCGCu- -3'
miRNA:   3'- aGGuGCGGGUUCGCG---G---------------CGGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 171852 0.7 0.505897
Target:  5'- aUCugGCCCAGGUGuuGCCGCaaacuaugauacgGCAGa -3'
miRNA:   3'- aGGugCGGGUUCGCggCGGCGg------------CGUU- -5'
10596 3' -64 NC_002687.1 + 225853 0.7 0.509447
Target:  5'- cUUACGUUCcgcCGCCGCCGCCGCGu -3'
miRNA:   3'- aGGUGCGGGuucGCGGCGGCGGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.