miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10596 3' -64 NC_002687.1 + 3219 0.66 0.712472
Target:  5'- --gGCGCCaucGGCGCCcucgagaCCGCCGCAu -3'
miRNA:   3'- aggUGCGGgu-UCGCGGc------GGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 10545 0.66 0.721559
Target:  5'- gUUCuCGCUCGGGCGaUCGCCGUCGguAc -3'
miRNA:   3'- -AGGuGCGGGUUCGC-GGCGGCGGCguU- -5'
10596 3' -64 NC_002687.1 + 11691 0.66 0.739534
Target:  5'- cCCGCuGCUCc--UGCUGCCGCCGCu- -3'
miRNA:   3'- aGGUG-CGGGuucGCGGCGGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 17534 0.7 0.457411
Target:  5'- -aCAC-UCCAAGCGuuGCgGCCGCAGc -3'
miRNA:   3'- agGUGcGGGUUCGCggCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 17643 0.76 0.21222
Target:  5'- gUCCGC-UCCAAGCGuuGCgGCCGCAGc -3'
miRNA:   3'- -AGGUGcGGGUUCGCggCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 17865 0.66 0.703328
Target:  5'- gUCAgUG-CCAAGCGuuGCgGCCGCAGc -3'
miRNA:   3'- aGGU-GCgGGUUCGCggCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 18252 0.67 0.638292
Target:  5'- aCCAaaGCUCGgacucuugaAGCGCCGCUgcgGCCGCAAc -3'
miRNA:   3'- aGGUg-CGGGU---------UCGCGGCGG---CGGCGUU- -5'
10596 3' -64 NC_002687.1 + 22982 0.7 0.491806
Target:  5'- aCCGCGUCCcguGAGCGCCuccCCGUgGCGAa -3'
miRNA:   3'- aGGUGCGGG---UUCGCGGc--GGCGgCGUU- -5'
10596 3' -64 NC_002687.1 + 39549 0.66 0.694133
Target:  5'- uUCCugG-CCAGGCGacugcucuacaCGCUGCUGCAu -3'
miRNA:   3'- -AGGugCgGGUUCGCg----------GCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 45323 0.72 0.400508
Target:  5'- -aCGCGCCCaAAGCGUCGaCCGUCGUc- -3'
miRNA:   3'- agGUGCGGG-UUCGCGGC-GGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 49332 0.71 0.43248
Target:  5'- cUCACGCCC--GCGCaCGCCGCCaCAu -3'
miRNA:   3'- aGGUGCGGGuuCGCG-GCGGCGGcGUu -5'
10596 3' -64 NC_002687.1 + 57496 0.7 0.474452
Target:  5'- cUCAUGgCCAucAGCGCCGCCGauGCAGc -3'
miRNA:   3'- aGGUGCgGGU--UCGCGGCGGCggCGUU- -5'
10596 3' -64 NC_002687.1 + 71828 0.66 0.739534
Target:  5'- ---gUGCCUAAGCGCCGUCGUgcuaGCGg -3'
miRNA:   3'- agguGCGGGUUCGCGGCGGCGg---CGUu -5'
10596 3' -64 NC_002687.1 + 72940 0.7 0.513007
Target:  5'- aUCACGUuucuuuacucgugugCCGA-CGCCGCCGCCGCc- -3'
miRNA:   3'- aGGUGCG---------------GGUUcGCGGCGGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 96367 0.69 0.527348
Target:  5'- cUCGCGUgCuuGGUGCCGgCGCCGCGGa -3'
miRNA:   3'- aGGUGCGgGu-UCGCGGCgGCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 125075 0.67 0.65699
Target:  5'- gCCuggUGCCCAcaaagGGCGCCGuuGCCuCAAu -3'
miRNA:   3'- aGGu--GCGGGU-----UCGCGGCggCGGcGUU- -5'
10596 3' -64 NC_002687.1 + 139128 0.72 0.392753
Target:  5'- cUCCAUGCCCAAGC-CUGUCGacccgaCGCGAu -3'
miRNA:   3'- -AGGUGCGGGUUCGcGGCGGCg-----GCGUU- -5'
10596 3' -64 NC_002687.1 + 145470 0.69 0.527348
Target:  5'- cCCAgCGCCCcGGCGCgCGCCuCgGCGAg -3'
miRNA:   3'- aGGU-GCGGGuUCGCG-GCGGcGgCGUU- -5'
10596 3' -64 NC_002687.1 + 166318 0.66 0.712472
Target:  5'- gUCACaCUCgGAGCuuaucuugGCCGCCGCCGCGu -3'
miRNA:   3'- aGGUGcGGG-UUCG--------CGGCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 171852 0.7 0.505897
Target:  5'- aUCugGCCCAGGUGuuGCCGCaaacuaugauacgGCAGa -3'
miRNA:   3'- aGGugCGGGUUCGCggCGGCGg------------CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.