miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10596 3' -64 NC_002687.1 + 331900 1.05 0.0021
Target:  5'- cUCCACGCCCAAGCGCCGCCGCCGCAAu -3'
miRNA:   3'- -AGGUGCGGGUUCGCGGCGGCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 17865 0.66 0.703328
Target:  5'- gUCAgUG-CCAAGCGuuGCgGCCGCAGc -3'
miRNA:   3'- aGGU-GCgGGUUCGCggCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 294881 0.66 0.712472
Target:  5'- uUCCAcCGCCU--GCGCCGCgaGgCGCAc -3'
miRNA:   3'- -AGGU-GCGGGuuCGCGGCGg-CgGCGUu -5'
10596 3' -64 NC_002687.1 + 250656 0.66 0.743093
Target:  5'- aCCAuCGCCgAAGaCGCgGCCGuucucacgaaaauguCCGCAAa -3'
miRNA:   3'- aGGU-GCGGgUUC-GCGgCGGC---------------GGCGUU- -5'
10596 3' -64 NC_002687.1 + 292423 0.73 0.314129
Target:  5'- aCaauCGCCCGuGCGCCGCgGCCGCc- -3'
miRNA:   3'- aGgu-GCGGGUuCGCGGCGgCGGCGuu -5'
10596 3' -64 NC_002687.1 + 17534 0.7 0.457411
Target:  5'- -aCAC-UCCAAGCGuuGCgGCCGCAGc -3'
miRNA:   3'- agGUGcGGGUUCGCggCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 96367 0.69 0.527348
Target:  5'- cUCGCGUgCuuGGUGCCGgCGCCGCGGa -3'
miRNA:   3'- aGGUGCGgGu-UCGCGGCgGCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 145470 0.69 0.527348
Target:  5'- cCCAgCGCCCcGGCGCgCGCCuCgGCGAg -3'
miRNA:   3'- aGGU-GCGGGuUCGCG-GCGGcGgCGUU- -5'
10596 3' -64 NC_002687.1 + 297975 0.68 0.61023
Target:  5'- --aACGCCCuuGCGuuGCgGCCGCc- -3'
miRNA:   3'- aggUGCGGGuuCGCggCGgCGGCGuu -5'
10596 3' -64 NC_002687.1 + 291602 0.66 0.694133
Target:  5'- uUCCGgGCaCCAaacAGUaGCC-CCGCCGCAc -3'
miRNA:   3'- -AGGUgCG-GGU---UCG-CGGcGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 125075 0.67 0.65699
Target:  5'- gCCuggUGCCCAcaaagGGCGCCGuuGCCuCAAu -3'
miRNA:   3'- aGGu--GCGGGU-----UCGCGGCggCGGcGUU- -5'
10596 3' -64 NC_002687.1 + 307256 0.68 0.591581
Target:  5'- cUCCAC-CaCC-AGCaCCGCCGCCGCc- -3'
miRNA:   3'- -AGGUGcG-GGuUCGcGGCGGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 315816 0.87 0.040395
Target:  5'- uUCCGcCGCgCCGGGUGCCGCCGCCGCAc -3'
miRNA:   3'- -AGGU-GCG-GGUUCGCGGCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 255622 0.67 0.675621
Target:  5'- aCCGCgGCUaCAAGCGCaucauucuuCGCCGCCGgGGg -3'
miRNA:   3'- aGGUG-CGG-GUUCGCG---------GCGGCGGCgUU- -5'
10596 3' -64 NC_002687.1 + 17643 0.76 0.21222
Target:  5'- gUCCGC-UCCAAGCGuuGCgGCCGCAGc -3'
miRNA:   3'- -AGGUGcGGGUUCGCggCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 182053 0.69 0.562884
Target:  5'- cUCCAagguUGCCCGAGCGuuGCCcauguccucggcgGUCGCGc -3'
miRNA:   3'- -AGGU----GCGGGUUCGCggCGG-------------CGGCGUu -5'
10596 3' -64 NC_002687.1 + 39549 0.66 0.694133
Target:  5'- uUCCugG-CCAGGCGacugcucuacaCGCUGCUGCAu -3'
miRNA:   3'- -AGGugCgGGUUCGCg----------GCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 294744 0.66 0.703328
Target:  5'- gCUGCucCCCGcGCGCgCGCCGCuCGCGAg -3'
miRNA:   3'- aGGUGc-GGGUuCGCG-GCGGCG-GCGUU- -5'
10596 3' -64 NC_002687.1 + 298042 0.76 0.232093
Target:  5'- --aGCGCCCAAuugauaaggccGCgGCCGCCGCCGCGc -3'
miRNA:   3'- aggUGCGGGUU-----------CG-CGGCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 171852 0.7 0.505897
Target:  5'- aUCugGCCCAGGUGuuGCCGCaaacuaugauacgGCAGa -3'
miRNA:   3'- aGGugCGGGUUCGCggCGGCGg------------CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.