miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 633 0.7 0.633741
Target:  5'- uGGCGUUCgccucccguccccGCCGCGCAgCGCGUCUCGc -3'
miRNA:   3'- -CCGUAGGac-----------CGGUGUGU-GCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 33317 0.7 0.639619
Target:  5'- cGGCGUCCauccGCCACACGCuGCaGUCgCUGg -3'
miRNA:   3'- -CCGUAGGac--CGGUGUGUG-CG-CAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 37548 0.7 0.639619
Target:  5'- aGCcgCCggaggGGCCACgAC-CGCGUCuCCGa -3'
miRNA:   3'- cCGuaGGa----CCGGUG-UGuGCGCAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 190744 0.7 0.639619
Target:  5'- cGCcgCCgucucgacgggGGCgGCGgcCGCGCGUCCCGg -3'
miRNA:   3'- cCGuaGGa----------CCGgUGU--GUGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 93782 0.7 0.659191
Target:  5'- cGCGUgCUGGCgGCGCuCGaGUCCCa -3'
miRNA:   3'- cCGUAgGACCGgUGUGuGCgCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 14197 0.7 0.659191
Target:  5'- aGCGUCCcGGCC-CGCugGcCGcCCCa -3'
miRNA:   3'- cCGUAGGaCCGGuGUGugC-GCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 57422 0.7 0.659191
Target:  5'- cGGCGUgCUGGUCgGCACG-GCG-CCCGu -3'
miRNA:   3'- -CCGUAgGACCGG-UGUGUgCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 90452 0.7 0.659191
Target:  5'- aGGCGagCUuuucggcgaGGCCGCGCGCGgcggggccgcCGUCCCGc -3'
miRNA:   3'- -CCGUagGA---------CCGGUGUGUGC----------GCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 93696 0.69 0.668952
Target:  5'- -uCGUCCUGGCCACGCGCcugguCGaCCUGc -3'
miRNA:   3'- ccGUAGGACCGGUGUGUGc----GCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 69246 0.69 0.668952
Target:  5'- cGCGaCCUGGCC-CGCuCGCGcuccguacguUCCCGg -3'
miRNA:   3'- cCGUaGGACCGGuGUGuGCGC----------AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 46881 0.69 0.668952
Target:  5'- uGCcgGUCCUGGCCA-AC-CGCGUCgCGa -3'
miRNA:   3'- cCG--UAGGACCGGUgUGuGCGCAGgGC- -5'
10698 5' -59.1 NC_002794.1 + 60647 0.69 0.678684
Target:  5'- cGGCGgcgCC-GGCCACccgGCGCGCGcCgCCGc -3'
miRNA:   3'- -CCGUa--GGaCCGGUG---UGUGCGCaG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 118283 0.69 0.678684
Target:  5'- cGGCGUCggGGaCCGCGCcggGCGCGUCgCu -3'
miRNA:   3'- -CCGUAGgaCC-GGUGUG---UGCGCAGgGc -5'
10698 5' -59.1 NC_002794.1 + 80336 0.69 0.688382
Target:  5'- gGGC-UCCUGaGCCucuGCGCguccaauaaGCGCGUCCgGg -3'
miRNA:   3'- -CCGuAGGAC-CGG---UGUG---------UGCGCAGGgC- -5'
10698 5' -59.1 NC_002794.1 + 36263 0.69 0.688382
Target:  5'- uGGCGUCgUGua-ACGC-CGCGUCCCGc -3'
miRNA:   3'- -CCGUAGgACcggUGUGuGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 65367 0.69 0.707641
Target:  5'- cGGCGcCCUGacGCCACACG-GCGcCCCc -3'
miRNA:   3'- -CCGUaGGAC--CGGUGUGUgCGCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 119541 0.69 0.717186
Target:  5'- -uCGUCCgcGGCCGuCGCcggccACGUGUCCCGg -3'
miRNA:   3'- ccGUAGGa-CCGGU-GUG-----UGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 1023 0.69 0.717186
Target:  5'- uGGCAUCC-GGcCCGCAcCACGCc-CCCu -3'
miRNA:   3'- -CCGUAGGaCC-GGUGU-GUGCGcaGGGc -5'
10698 5' -59.1 NC_002794.1 + 195111 0.68 0.726665
Target:  5'- cGGCGUCUcgUGcGCCcgcgGCGCGCGCGggCUCGc -3'
miRNA:   3'- -CCGUAGG--AC-CGG----UGUGUGCGCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 53603 0.68 0.736069
Target:  5'- cGGCGUCaccgGGCCGC-CGCaGCGUCggaCGg -3'
miRNA:   3'- -CCGUAGga--CCGGUGuGUG-CGCAGg--GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.