miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 109166 0.77 0.337674
Target:  5'- -aUGgcgaCGAGCGGCGGUAGCGGCGGa -3'
miRNA:   3'- ugACag--GCUCGUCGUCGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 103566 0.77 0.340688
Target:  5'- --cGUCCGAcgccguggccgacgaGCAGCggucgggcaGGCAGCGGCGGCa -3'
miRNA:   3'- ugaCAGGCU---------------CGUCG---------UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 138427 0.77 0.35294
Target:  5'- gACUcgUCGAGCcGCGGUGGCGGCGGCg -3'
miRNA:   3'- -UGAcaGGCUCGuCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 150219 0.76 0.360754
Target:  5'- uGCUG-CCGAGCuGCGuGCGACGGCaGCu -3'
miRNA:   3'- -UGACaGGCUCGuCGU-CGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 127343 0.76 0.367889
Target:  5'- cGCUG-CCGAgacgcucGCGGCGGCGGC-GCGGCc -3'
miRNA:   3'- -UGACaGGCU-------CGUCGUCGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 194767 0.76 0.37674
Target:  5'- gACUGcUCCGAGaaCGGcCGGCAcgcgcGCAGCGGCu -3'
miRNA:   3'- -UGAC-AGGCUC--GUC-GUCGU-----UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 154365 0.76 0.37674
Target:  5'- cGCgGUCCaGGCcGCGGCGGCGGCGGg -3'
miRNA:   3'- -UGaCAGGcUCGuCGUCGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 191995 0.76 0.38491
Target:  5'- gACgg-CCGGGaCGGUAGCGGCGGUGGCc -3'
miRNA:   3'- -UGacaGGCUC-GUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 14488 0.76 0.393197
Target:  5'- cGCUGUUCGcGGCGGCGGCccGCGcucGCGGCg -3'
miRNA:   3'- -UGACAGGC-UCGUCGUCGu-UGU---CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 191671 0.76 0.393197
Target:  5'- gGCg--CCG-GCAGCGGCGGCGGCGuGCc -3'
miRNA:   3'- -UGacaGGCuCGUCGUCGUUGUCGC-CG- -5'
10699 3' -56.8 NC_002794.1 + 179663 0.76 0.393197
Target:  5'- gGCUcgCCGGacggcacccGCGGCGGCGACGGUGGCg -3'
miRNA:   3'- -UGAcaGGCU---------CGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 95825 0.76 0.393197
Target:  5'- gGCgGcCgGGGgAGCGGCGGCGGCGGCc -3'
miRNA:   3'- -UGaCaGgCUCgUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 20974 0.76 0.393197
Target:  5'- aGCUcaCCG-GCAGCGGCGGCGGCaGCg -3'
miRNA:   3'- -UGAcaGGCuCGUCGUCGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 71347 0.76 0.401599
Target:  5'- --cGUCCGccaGGCGgcGCAGCAGguGCGGCa -3'
miRNA:   3'- ugaCAGGC---UCGU--CGUCGUUguCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 188247 0.75 0.410114
Target:  5'- --cGaCCGgcGGCGGCGGCggUAGCGGCg -3'
miRNA:   3'- ugaCaGGC--UCGUCGUCGuuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 37731 0.75 0.436318
Target:  5'- -----gCGAGCGGCGGCGccgccgGCGGCGGCg -3'
miRNA:   3'- ugacagGCUCGUCGUCGU------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 13266 0.75 0.436318
Target:  5'- gGCUGUggUgGAGCGGCcGCuguuGACGGCGGCa -3'
miRNA:   3'- -UGACA--GgCUCGUCGuCG----UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 87354 0.75 0.454314
Target:  5'- aGCggGUCCG-GCGGCgAGCGGCguucugGGCGGCg -3'
miRNA:   3'- -UGa-CAGGCuCGUCG-UCGUUG------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 49399 0.75 0.454314
Target:  5'- cGCcGUCgGccacGGCGGCcGCGGCGGCGGCg -3'
miRNA:   3'- -UGaCAGgC----UCGUCGuCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 91869 0.75 0.454314
Target:  5'- --gGUCCcGGgGGUGGCGGCGGCGGCc -3'
miRNA:   3'- ugaCAGGcUCgUCGUCGUUGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.